Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L13
         (344 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22HG0 Cluster: Putative uncharacterized protein; n=1; ...    33   1.3  
UniRef50_UPI0001509F85 Cluster: hypothetical protein TTHERM_0044...    31   4.0  
UniRef50_Q08JM5 Cluster: Putative uncharacterized protein orf43;...    31   6.9  
UniRef50_A5FRZ6 Cluster: 3-dehydroquinate dehydratase, type I; n...    31   6.9  
UniRef50_Q0HFP9 Cluster: Carbon starvation protein CstA; n=16; A...    30   9.2  
UniRef50_Q8ENU2 Cluster: Methionine import ATP-binding protein m...    30   9.2  

>UniRef50_Q22HG0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 880

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 122 TSSAFTKIQK*HAHNSDIYLYIKYNTRNNFNLNLLQK 232
           T  +F +IQK      D YL  +YN RNN+  +++QK
Sbjct: 797 TMQSFYQIQKEKISKGDKYLQEEYNNRNNYQDHMIQK 833


>UniRef50_UPI0001509F85 Cluster: hypothetical protein TTHERM_00445990;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00445990 - Tetrahymena thermophila SB210
          Length = 1516

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 251  FKLYGLIFVIDLN*NYFVYCILYINIYQSCVRVIFVFL*KLKMLVY 114
            F+L   I +++ N NY  Y ++ +  Y SC++   +   K+K L Y
Sbjct: 1385 FQLIRKILILNQNDNYMKYSVIVLKSYGSCIKDNSIVGEKMKSLAY 1430


>UniRef50_Q08JM5 Cluster: Putative uncharacterized protein orf43;
           n=1; Escherichia coli|Rep: Putative uncharacterized
           protein orf43 - Escherichia coli
          Length = 353

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 258 ISFQTLWSYFCNRFKLKLFRVLYFIYKYISELCACHFCIFVKA 130
           IS   LW   C  FK+K +R++  I KY S     +F ++V A
Sbjct: 58  ISSVILWPKACKYFKMKAWRIVVEIRKYYSLSPINYFILYVGA 100


>UniRef50_A5FRZ6 Cluster: 3-dehydroquinate dehydratase, type I; n=3;
           Dehalococcoides|Rep: 3-dehydroquinate dehydratase, type
           I - Dehalococcoides sp. BAV1
          Length = 222

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 113 DTPTSSAF-TKIQK*HAHNSDIYLYIKYNTRNNFNLNLLQK*DHRV*KLISPKKFAQFKI 289
           DTP+++   T ++    H +DIY  I   T  N N+NLL      + K I  KK   F +
Sbjct: 116 DTPSAAKLKTLLKDMLTHQADIYKVITTATSINDNINLL-----NLTKEIPDKKIVAFAM 170

Query: 290 PFPGLRIMSKISMNLA 337
             PG  I+S+I   LA
Sbjct: 171 GEPG--ILSRILCPLA 184


>UniRef50_Q0HFP9 Cluster: Carbon starvation protein CstA; n=16;
           Alteromonadales|Rep: Carbon starvation protein CstA -
           Shewanella sp. (strain MR-4)
          Length = 491

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 288 ILNCANFFGEISFQTLWSYFCNRFKLKLFRVLYFIYKYISELCACHFCIFVKA 130
           IL  A F  +I F  +W YF     L    VL+   KY+ +  + H+ + + A
Sbjct: 384 ILTIAYFMTKIDFSLIWRYFAFSNMLLSTSVLWLATKYLFDRGSFHWIVSLPA 436


>UniRef50_Q8ENU2 Cluster: Methionine import ATP-binding protein metN
           2; n=10; Firmicutes|Rep: Methionine import ATP-binding
           protein metN 2 - Oceanobacillus iheyensis
          Length = 342

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 324 DIFDIIRNPGNGILNCANFFGEISFQTLWSYFCNRFKLKL 205
           DI  II N  +G+L   +F GE + QTL S    +F + L
Sbjct: 252 DISTIIENYPDGVLYRVHFLGETTNQTLISQIAKQFSVDL 291


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,190,087
Number of Sequences: 1657284
Number of extensions: 3798724
Number of successful extensions: 9674
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9671
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)