Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L13
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1315 + 32586448-32586589,32587009-32587040,32587280-325873...    29   0.74 
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786...    27   5.2  

>04_04_1315 +
           32586448-32586589,32587009-32587040,32587280-32587311,
           32587583-32587609,32588042-32588118,32589232-32589251
          Length = 109

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = -1

Query: 191 ILYINIYQSCVRVIFVFL*KLKMLVYLLSV 102
           +LYINI +  ++VI V L  LK LV++LS+
Sbjct: 70  LLYINITERLIQVINVALYVLKCLVFVLSL 99


>01_01_0994 -
           7861310-7862119,7862378-7862498,7862718-7862901,
           7862975-7863070,7863428-7863476,7863555-7863596,
           7863684-7863836,7865631-7865705,7866462-7866587
          Length = 551

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 251 KLISPKKFAQFKIPFPGLRIMSKISMNL 334
           K +SPK F +FKIP      +++++M +
Sbjct: 203 KTLSPKWFEEFKIPITSWESLNELAMEV 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,115,876
Number of Sequences: 37544
Number of extensions: 86670
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)