Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L13
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.     26   6.3  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    26   6.3  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    26   6.3  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    26   6.3  
AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    26   6.3  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical
           protein M04B2.5 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 344 LSWL-DSSIFLTLFVIRETGF*TV--QISLGK*VFKLYGLIFV 225
           L W   S+ F ++ V   TG+ ++    SLGK +  +YGLIFV
Sbjct: 236 LKWTYGSAFFFSMNVYTTTGYGSIAPSSSLGKALVIVYGLIFV 278


>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
          Length = 4250

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 119 PTSSAFTKIQK*HAHNSDIYLYIKYNT----RNNFNLNLLQ 229
           P  S    I+K  AH++D+Y+ +  N     ++ F+LN+LQ
Sbjct: 120 PDGSGRLIIEKVDAHDADMYMLVARNDGGSFQSRFSLNVLQ 160


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform a
           protein.
          Length = 4488

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 119 PTSSAFTKIQK*HAHNSDIYLYIKYNT----RNNFNLNLLQ 229
           P  S    I+K  AH++D+Y+ +  N     ++ F+LN+LQ
Sbjct: 358 PDGSGRLIIEKVDAHDADMYMLVARNDGGSFQSRFSLNVLQ 398


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform d
           protein.
          Length = 4369

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 119 PTSSAFTKIQK*HAHNSDIYLYIKYNT----RNNFNLNLLQ 229
           P  S    I+K  AH++D+Y+ +  N     ++ F+LN+LQ
Sbjct: 358 PDGSGRLIIEKVDAHDADMYMLVARNDGGSFQSRFSLNVLQ 398


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform c
           protein.
          Length = 4447

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 119 PTSSAFTKIQK*HAHNSDIYLYIKYNT----RNNFNLNLLQ 229
           P  S    I+K  AH++D+Y+ +  N     ++ F+LN+LQ
Sbjct: 358 PDGSGRLIIEKVDAHDADMYMLVARNDGGSFQSRFSLNVLQ 398


>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 162 CACHFCIFVKAEDVGVSP 109
           CAC +C F K  +VG+ P
Sbjct: 91  CACRYCRFQKCLNVGMRP 108


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 342 ILARFIDIFDIIRNPGNGILNCANFFGEISFQ 247
           I  +F D  D  +N  N +LN A F+  +SF+
Sbjct: 223 ISKKFADNADQFKNDFNILLNTATFYNALSFK 254


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 342 ILARFIDIFDIIRNPGNGILNCANFFGEISFQ 247
           I  +F D  D  +N  N +LN A F+  +SF+
Sbjct: 236 ISKKFADNADQFKNDFNILLNTATFYNALSFK 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,855,270
Number of Sequences: 27780
Number of extensions: 98288
Number of successful extensions: 309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)