Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L12
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 66 2e-12
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 27 1.3
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 2.3
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 25 3.1
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 4.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 5.4
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 5.4
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 25 5.4
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 24 7.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 24 7.1
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 7.1
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 24 7.1
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 24 9.4
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 24 9.4
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 65.7 bits (153), Expect = 2e-12
Identities = 31/68 (45%), Positives = 47/68 (69%)
Frame = +1
Query: 124 MSSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRSK 303
MS+ + L KAI LV A + D + Y +A + Y+ ++YF+ A+KYE + E++KE IRSK
Sbjct: 1 MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59
Query: 304 CLQYLDRA 327
++YLDRA
Sbjct: 60 VIEYLDRA 67
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 1.3
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 127 SSSNTLQKAIDLVTKATEEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRS 300
+S + + + E+ N E+ L+ +Y F VK+ A + + S++
Sbjct: 85 ASPKDINVVLAFANASGEQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQ 144
Query: 301 KCLQYLD 321
C QYLD
Sbjct: 145 SCFQYLD 151
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 169 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 294
K +E K+K+ ++ +LYE + + +YE E KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 280 LFHPVLHISLHEENIPH 230
+FHP +H+ ++EE I H
Sbjct: 53 IFHPQVHMWMYEEKIQH 69
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 133 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRSKCLQ 312
+++ Q+AID K E KNKN E A + E + H ++ + +R K+ + L+
Sbjct: 509 ASSAQEAIDKKEKMEREMKNKNLELADMILER--DRARHELETMHRSQRDKQESTERELR 566
Query: 313 YL 318
L
Sbjct: 567 LL 568
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 339 GIFEKGSQEKTSKGW 383
G+F+KGS ++T GW
Sbjct: 1899 GLFDKGSFQETLNGW 1913
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 24.6 bits (51), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 190 NKNYEEALRLYEHGVEYFL-HAVKYEAQGERAK 285
N+N+E+ L +HG + L +A + QG K
Sbjct: 367 NQNFEDRTHLSDHGAHFHLGNANDFNMQGSSRK 399
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 172 ATEEDKNKNYEEALRLYEHGVEYFLHAVKYE 264
A E K K YEEA +LY ++ L+ +E
Sbjct: 69 ANEAFKRKKYEEAKKLYGLALQLALNRCTWE 99
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 187 KNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKES 291
K K++EE R Y + +L + E ++ KES
Sbjct: 360 KKKDFEETSRDYYTSLSRYLSKSEKETSSDKTKES 394
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 118 REMSSSNTLQKAIDLVTKATEEDKNKNYEEALR 216
R + +TLQK + TKA E+ ++ N E AL+
Sbjct: 1068 RHADARSTLQKLREDYTKALEQVEDLNKEIALK 1100
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 120 PMLNTATMKLGAYDKKVASMSYN*K 46
P+L T KL A KKV +SY K
Sbjct: 253 PILLAVTAKLSALQKKVNDVSYRFK 277
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 118 REMSSSNTLQKAIDLVTKATEED-KNKNYEEALRLYEHGVE 237
+E+S K L +K E+ KN+NY ALR + +E
Sbjct: 558 KELSKMMMSNKQRKLYSKLKNENSKNENYNNALRNRKRDIE 598
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 265 LHISLHEENIPHHVHRALKLLHNF 194
++I +H+ IP + AL LLHNF
Sbjct: 19 VNIKIHQVCIPLLLLTALVLLHNF 42
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 253 LHEENIPHHVHRALKLLHNFYS 188
L I HV RA +LL FYS
Sbjct: 170 LEPHGIHRHVSRAKRLLSKFYS 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,920
Number of Sequences: 5004
Number of extensions: 25777
Number of successful extensions: 95
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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