Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L12
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 51 3e-07
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 50 5e-07
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 46 1e-05
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 29 1.7
01_06_0155 - 27057150-27057425 29 1.7
05_03_0414 + 13650483-13651388,13651559-13651657 28 2.2
04_01_0600 + 7907142-7908047,7908218-7908316 28 2.2
04_04_0236 + 23825368-23825763,23826229-23828667 28 2.9
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 27 3.8
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 27 5.1
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 27 5.1
12_01_1047 + 10765856-10767784 27 6.7
09_02_0320 + 7221426-7221478,7221797-7221875,7221968-7222100,722... 26 8.9
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 51.2 bits (117), Expect = 3e-07
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +1
Query: 133 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRSKCLQ 312
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + KE+I +K +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKFTE 61
Query: 313 YLDRA 327
YL RA
Sbjct: 62 YLRRA 66
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 50.4 bits (115), Expect = 5e-07
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +1
Query: 133 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRSKCLQ 312
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + K++I +K +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYE-KDPKIKDAIAAKFTE 61
Query: 313 YLDRA 327
YL RA
Sbjct: 62 YLRRA 66
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 145 QKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRSKCLQYLDR 324
++ I LV KA EED N+ AL LY H ++Y +KYE + R +++I +K Y+ R
Sbjct: 7 EQGILLVRKAVEEDDAGNHARALPLYVHALDYLAAHLKYE-RNPRVRDAITAKLAGYIAR 65
Query: 325 A 327
A
Sbjct: 66 A 66
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 136 NTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 294
N + K I+L E++ K EEA R Y+ E HA + A GE+ ++
Sbjct: 605 NLVNKEIELYNTMLEKEGTKGEEEARRAYKAAREESDHAAEI-AAGEKVSSAL 656
>01_06_0155 - 27057150-27057425
Length = 91
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 127 SSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIR 297
SSS+ ++++ ++ ++++ NK +EEAL Y G H V G + + +R
Sbjct: 6 SSSSRNSNSVNMDSEWSKKE-NKLFEEALAYYGEGAPDLFHKVSRAMGGTKTADEVR 61
>05_03_0414 + 13650483-13651388,13651559-13651657
Length = 334
Score = 28.3 bits (60), Expect = 2.2
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +1
Query: 133 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRSKCLQ 312
+ L K +DL TK +K +N E RL +H + V G RAK S+R C+Q
Sbjct: 156 AEVLLKNVDLKTKYHCPEKYENEE---RLADHKAQCSFRPVTCPNDGCRAKVSVR--CMQ 210
Query: 313 YLDRA 327
D A
Sbjct: 211 DHDSA 215
>04_01_0600 + 7907142-7908047,7908218-7908316
Length = 334
Score = 28.3 bits (60), Expect = 2.2
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +1
Query: 133 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRSKCLQ 312
+ L K +DL TK +K +N E RL +H + V G RAK S+R C+Q
Sbjct: 156 AEVLLKNVDLKTKYHCPEKYENEE---RLADHKAQCSFRPVTCPNDGCRAKVSVR--CMQ 210
Query: 313 YLDRA 327
D A
Sbjct: 211 DHDSA 215
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 148 KAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRS 300
KAI K T+ + N ++ LY+HG +YF V+ A A E + S
Sbjct: 753 KAIKATGKGTKPE-NAREDKVDNLYKHGHQYFADIVEMGATDPDAMEYVLS 802
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 160 LVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYE 264
+V +ATE N +EE Y HG + L A YE
Sbjct: 125 VVAEATECTNNDYFEEVYEYYAHGDAWRLPAGAYE 159
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 27.1 bits (57), Expect = 5.1
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +1
Query: 118 REMSSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIR 297
R + + L K +DL TK +K YE RL +H + V G RAK S+R
Sbjct: 180 RREAIAEVLLKNVDLKTKYHCPEK---YENEQRLADHKAQCSFRPVTCPNDGCRAKVSVR 236
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 184 DKNKNYEEALRLYEHGVEYF 243
++NK +E+A ++YE GV+ F
Sbjct: 571 EENKYFEDAFKVYERGVKIF 590
>12_01_1047 + 10765856-10767784
Length = 642
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
Frame = +1
Query: 184 DKNKNYEEALRLYEH----GVEYFLHA 252
+K K Y+EALR++EH GV+ LHA
Sbjct: 440 EKGKLYDEALRVWEHMCKVGVKPNLHA 466
>09_02_0320 +
7221426-7221478,7221797-7221875,7221968-7222100,
7222354-7222388
Length = 99
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 74 FLSYA---PNFMVAVFNIGK*VHQIPCK 148
FL+YA P +A G+ +HQIPCK
Sbjct: 32 FLAYASEDPFIDIANVQTGRSIHQIPCK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,452,763
Number of Sequences: 37544
Number of extensions: 137683
Number of successful extensions: 305
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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