Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L11
(224 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 29 0.59
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 26 3.1
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 26 3.1
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 26 3.1
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 26 3.1
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 26 3.1
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 26 4.1
Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical p... 26 4.1
Z46267-13|CAH04746.1| 845|Caenorhabditis elegans Hypothetical p... 26 4.1
Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 26 4.1
Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 26 4.1
Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical p... 26 4.1
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 26 4.1
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 25 5.5
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 25 5.5
AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein. 25 5.5
AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacti... 25 5.5
AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacti... 25 5.5
AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacti... 25 5.5
AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacti... 25 5.5
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 25 7.2
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 25 7.2
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 25 7.2
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 28.7 bits (61), Expect = 0.59
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 104
R++ K K AE + KL+ +RK+ ++ +EE
Sbjct: 882 RREEKCKEKEAEEENEKLIPERKRMEAIKEEEE 914
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 9 KKRLAKRKSAEADYAKLLAQRKK 77
KK + RKS E YAKL A+R K
Sbjct: 871 KKAESARKSQEEAYAKLSAERSK 893
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 9 KKRLAKRKSAEADYAKLLAQRKK 77
KK + RKS E YAKL A+R K
Sbjct: 871 KKAESARKSQEEAYAKLSAERSK 893
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 9 KKRLAKRKSAEADYAKLLAQRKK 77
KK + RKS E YAKL A+R K
Sbjct: 871 KKAESARKSQEEAYAKLSAERSK 893
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIK 110
+K+RLAKRK EA+ + ++ E+ + +E K
Sbjct: 93 KKERLAKRKQKEAESSAKKSENATETTTEKPKEQK 127
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 104
+KK++ K K ++ D K ++KK K +++E
Sbjct: 292 KKKKVKKSKKSKKDKKKEKKEKKKSKKANKEKE 324
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical
protein F49E2.5i protein.
Length = 1030
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-13|CAH04746.1| 845|Caenorhabditis elegans Hypothetical
protein F49E2.5h protein.
Length = 845
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical
protein F49E2.5g protein.
Length = 528
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical
protein F49E2.5f protein.
Length = 611
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical
protein F49E2.5e protein.
Length = 581
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical
protein F49E2.5c protein.
Length = 1030
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical
protein F49E2.5b protein.
Length = 947
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical
protein F49E2.5a protein.
Length = 1215
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 KKRLAK-RKSAEADYAKLLAQRKKESKVRRQEEIK 110
++R+ K ++ EAD KL A++KKE V+ ++ K
Sbjct: 126 QERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEK 160
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQE 101
+KK KR AD A+ + KES+ RR+E
Sbjct: 144 KKKTENKRAKQLADQAQARRDKNKESRKRREE 175
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQE 101
R+++ + A+AD K+ RK E KVRRQ+
Sbjct: 131 RRRKEEDERKAKADAEKI---RKNEEKVRRQQ 159
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQE 101
R+++ + A+AD K+ RK E KVRRQ+
Sbjct: 131 RRRKEEDERKAKADAEKI---RKNEEKVRRQQ 159
>AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein.
Length = 481
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 12 KRLAKRKSAEADYAKLLAQRKKESKVRRQEEIK 110
KR +R+ E + L Q ++E +RRQEE+K
Sbjct: 273 KRAEERRQIETER---LRQEEEELNIRRQEELK 302
>AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacting
protein protein4, isoform b protein.
Length = 568
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIK 110
R RL+ + E + + LAQ++K + + EE++
Sbjct: 159 RYHRLSNEEKRELNLKRTLAQKRKRQREKEMEELE 193
>AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacting
protein protein4, isoform c protein.
Length = 542
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIK 110
R RL+ + E + + LAQ++K + + EE++
Sbjct: 159 RYHRLSNEEKRELNLKRTLAQKRKRQREKEMEELE 193
>AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacting
protein protein4, isoform f protein.
Length = 564
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIK 110
R RL+ + E + + LAQ++K + + EE++
Sbjct: 155 RYHRLSNEEKRELNLKRTLAQKRKRQREKEMEELE 189
>AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacting
protein protein4, isoform a protein.
Length = 545
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 6 RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIK 110
R RL+ + E + + LAQ++K + + EE++
Sbjct: 136 RYHRLSNEEKRELNLKRTLAQKRKRQREKEMEELE 170
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 66 QRKKESKVRRQEEIK 110
Q+ KESKV ++EEIK
Sbjct: 141 QKSKESKVEKKEEIK 155
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 9 KKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 104
K++ A+RK A + A+RK+ + RRQ+E
Sbjct: 88 KEKQAQRKLAREQEEREAAERKRLDEERRQKE 119
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 9 KKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 104
K++ A+RK A + A+RK+ + RRQ+E
Sbjct: 88 KEKQAQRKLAREQEEREAAERKRLDEERRQKE 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,833
Number of Sequences: 27780
Number of extensions: 36825
Number of successful extensions: 150
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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