Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L10
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    64   7e-12
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   1.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   1.8  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   1.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   2.3  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   2.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   4.1  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    25   4.1  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   5.4  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    24   7.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    24   7.1  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 64.1 bits (149), Expect = 7e-12
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +1

Query: 220 WSHDGWYKSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHT 357
           W         DHAS+RRG++VY++VC ACHSL  IA+R+LV VTHT
Sbjct: 77  WPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVGVTHT 122


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -1

Query: 211 EEDELHYQMPAL--IVQAPIVVFLHHHQQCPMLKATIFY 101
           EED    Q PA+   V        H  Q CP L ATIFY
Sbjct: 273 EEDAKTSQHPAIWICVSKKAPSASHFLQSCPDLSATIFY 311


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 248 SDLYHPSWLHGW*GG*ASLPDACTDCSSANSSVPTPPPTMPNVESH 111
           SD+ HP W+H    G  +    C  C +  S   +      ++E+H
Sbjct: 222 SDVMHPKWVHSLFEGTLTSETKCLTCENITSRDESFLDLSIDIENH 267


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 191 PDACTDCSSANSSVPTPPPTMP 126
           P A T   SAN S PTP P  P
Sbjct: 62  PQAATVSESANVSRPTPAPVPP 83


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 ASLPDACTDCSSANSSVPTPPPTMPNVESHNFLFFVHP*APVDS*QTWGA 51
           AS   A +   SAN  +P PPP  P   S++F    +  AP D+    GA
Sbjct: 289 ASKTQAPSSGDSANGGLPPPPPPPP--PSNDFWKDSNEPAPADNKGDMGA 336


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 170 SSANSSVPTPPPTM 129
           SSANS+ PTP PT+
Sbjct: 613 SSANSNAPTPAPTV 626



 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 170 SSANSSVPTPPPTMPNVESHNFL 102
           S ++SS P PPP +P   +  FL
Sbjct: 117 SFSSSSAPPPPPILPIDSAGGFL 139


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 200 ASLPDACTDCSSANSSVPTPPPTMP 126
           AS P +  D ++  SS P PP  MP
Sbjct: 548 ASTPLSTDDIATPLSSAPNPPSVMP 572


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -3

Query: 227 WLHGW*GG*A--SLPDACTDCSSANSSVPTPPPTMPNVESHNFLFFVHP 87
           +L GW  G    ++ D   D S  ++         P+  SHN +  VHP
Sbjct: 178 FLRGWNAGGQLLTMKDIYEDVSGEHAGKTVTMEPFPHYHSHNTMASVHP 226


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 20  VHVFSKNMGLWHPRFVSCPL 79
           +H F++ +G WHP    CPL
Sbjct: 328 IHFFNE-IGYWHPGSGHCPL 346


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 175 SVQASGSEAHPPHQPWSHDGWYKSLDHASVRRGYEV 282
           +  A+ S A+P H P  HD  +      SV  GY++
Sbjct: 29  TTDATTSRANPAHVPEEHDKPFPVKLDDSVFEGYKI 64


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 200 ASLPDACTDCSSANSSVPTPPPTMPNVESHNFLFFVHP*APV 75
           +S+PD  + C S NS+V +    + +  S N +  V   AP+
Sbjct: 78  SSVPDLSSSCDSINSTVESDAGHVVDSNSFNRIDNVSVNAPI 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,995
Number of Sequences: 5004
Number of extensions: 37139
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)