Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L10
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 67 5e-12
03_06_0049 + 31282563-31282841,31283052-31283903,31284109-312841... 31 0.24
10_08_0478 + 18192636-18192784,18192991-18193052,18193381-181934... 28 2.9
09_02_0327 - 7284829-7284889,7284946-7286126 27 3.8
08_01_0806 - 7791882-7792219,7793553-7793649,7796593-7796733 27 3.8
07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271... 27 3.8
07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415... 27 5.1
01_05_0175 - 18936752-18937621,18938855-18941641 27 5.1
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386 27 6.7
01_03_0203 - 13767742-13768059 27 6.7
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 26 8.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 8.9
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 26 8.9
07_03_1519 + 27390204-27390590,27390591-27390809,27392516-273929... 26 8.9
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856... 26 8.9
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 26 8.9
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 66.9 bits (156), Expect = 5e-12
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = +1
Query: 217 PWSHDGWYKSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHT 357
PW H G S DHAS+RRG++VY QVC +CHS+ I++R+LV V +T
Sbjct: 457 PWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYT 503
>03_06_0049 +
31282563-31282841,31283052-31283903,31284109-31284194,
31284544-31284678,31285087-31285252
Length = 505
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 194 VKLILLTNHGAMMGGTSHWIMPVSDEVMKCTNKCARLAIPCS 319
+K L+ H +M HW V DE+ C +C+R +P S
Sbjct: 365 IKTHLIVKHRTLMVKHMHWYQ-VGDEISPCECRCSRARLPPS 405
>10_08_0478 +
18192636-18192784,18192991-18193052,18193381-18193437,
18193771-18193805,18193940-18194043,18194238-18194313,
18194469-18194527,18194879-18194962,18195065-18195129,
18195241-18195323,18195670-18195760,18195847-18196157
Length = 391
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 265 GHWHDPVTCTTHHGSMVGEEDELHYQMPALIVQAPIVV 152
G W+DP +G M +E +H+ + A I +AP+++
Sbjct: 227 GGWNDPDMLEVGNGGMTNDEYIVHFSLWA-ISKAPLII 263
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 170 SSANSSVPTPPPTMPNVESHNFLFFV 93
+S +S P PPP P + H FLF +
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLL 163
>08_01_0806 - 7791882-7792219,7793553-7793649,7796593-7796733
Length = 191
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 160 IVVFLHHHQQCPMLKATIFYFLSIPEHQWTADKPGVPQAHIF 35
+++ L QC MLK F F++ P T G P+ H F
Sbjct: 132 VILLLADQHQCDMLKQACFSFIANPNTLETV--TGTPEYHQF 171
>07_03_0230 +
15526504-15526673,15526809-15526867,15527135-15527139,
15528165-15528268,15528362-15528437,15528646-15528704,
15528803-15528868,15529372-15529455,15529608-15529672,
15529758-15529840,15529949-15530039,15530142-15530194,
15530285-15530428,15530562-15530675
Length = 390
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 265 GHWHDPVTCTTHHGSMVGEEDELHYQMPALIVQAPIVV 152
G W+DP +G M +E +H + A I +AP+++
Sbjct: 226 GGWNDPDMLEVGNGGMTNDEYVVHISLWA-IAKAPLII 262
>07_03_1405 +
26340645-26340921,26341003-26341226,26341315-26341562,
26341622-26342051,26342630-26343049
Length = 532
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 247 LDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNV 348
+ H + Y KQV A LQ+IAF +L++V
Sbjct: 211 ISHTAFGSSYAEGKQVFMAIKELQFIAFSSLLSV 244
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 197 SLPDACTDCSSANSSVPTPPPTMPNVESHNFLFFVHP 87
S PD + A++S PP V H F+ F P
Sbjct: 71 SYPDFALPTAPASASAAAAPPRYDRVPPHAFVHFARP 107
>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
Length = 871
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 185 ACTDCSSANSSVPTPPPTMP 126
AC+ C + +V TPPPT P
Sbjct: 326 ACSFCQTEFVAVETPPPTAP 345
>01_03_0203 - 13767742-13768059
Length = 105
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 181 ALIVQAPIVVFLH-HHQQCP-MLKATIFYFLSIPE 83
A + A I+V LH HH P ++AT+F L PE
Sbjct: 60 ACCIAAIIIVHLHLHHPSLPGAIEATMFIVLVFPE 94
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 244 TCTTHHGSMVGEE-DELHYQMPALIVQAPIVVFLHHHQQCPMLKATIFYFLSI 89
T T+ H V E+ + + L + A V F + QCP+ +FY +I
Sbjct: 424 TNTSEHNVRVDEQPNSARRRSGWLFIAAAPVCFCQNSTQCPVESLALFYLCNI 476
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 161 NSSVPTPPPTMPNVESHNFL 102
N SVP PPP P + +H+ L
Sbjct: 614 NRSVPPPPPPPPPLPNHSVL 633
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 262 HWHDPVTCTTHHGSMVGEEDE 200
H PV CT +G++ G++DE
Sbjct: 918 HGEQPVACTNVNGTVDGDQDE 938
>07_03_1519 +
27390204-27390590,27390591-27390809,27392516-27392962,
27393076-27393274,27393372-27393456,27393566-27393998
Length = 589
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 262 HWHDPVTCTTHHG 224
HWH P TC HG
Sbjct: 470 HWHHPCTCWCPHG 482
>03_05_0351 - 23382786-23382821,23383373-23383634,23384369-23385675,
23385776-23386290,23386379-23386741,23386916-23387284,
23387365-23388057,23388152-23388238,23388354-23388612
Length = 1296
Score = 26.2 bits (55), Expect = 8.9
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 161 WRLNNQCRHLVVKLILLTNHGAM--MG-GTSHWIMPVSDEVMKCTNKCARLAIPCSILHS 331
+R NN C H+V +++L+ G + MG + + P DE T R I S +
Sbjct: 1123 YRRNNACPHVVQQMVLIDIRGMLQSMGKEITSFSFPEIDESHDSTRGDPREIIEESSIGV 1182
Query: 332 ETS*MSL 352
ET M+L
Sbjct: 1183 ETDDMNL 1189
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 188 LVVKLILLTNHGAMMGGTSHW 250
LV K+++LT+ +M GG+S W
Sbjct: 138 LVKKMLMLTSCSSMAGGSSTW 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,523,719
Number of Sequences: 37544
Number of extensions: 275512
Number of successful extensions: 1187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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