Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L09
         (240 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VGQ7 Cluster: Putative uncharacterized protein; n=1; ...    31   3.7  
UniRef50_A7HX27 Cluster: Sugar transporter; n=1; Parvibaculum la...    31   6.5  
UniRef50_A2E7S5 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  

>UniRef50_Q7VGQ7 Cluster: Putative uncharacterized protein; n=1;
           Helicobacter hepaticus|Rep: Putative uncharacterized
           protein - Helicobacter hepaticus
          Length = 210

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 146 NKTQTVGAVLKINLS-TPN-ALL*TSFKNNTPVRRWKFFLKL 27
           NK Q +G +  +NL  T N AL  +   NN P+ RWKF L++
Sbjct: 141 NKIQDLGELRPLNLDRTHNDALWESEILNNLPLGRWKFVLEI 182


>UniRef50_A7HX27 Cluster: Sugar transporter; n=1; Parvibaculum
           lavamentivorans DS-1|Rep: Sugar transporter -
           Parvibaculum lavamentivorans DS-1
          Length = 485

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 67  FLKLVYNRALGVDKFILSTAPTVCVLFTQI 156
           F  L YN+ LGVD F++S A  + ++F  +
Sbjct: 37  FTLLFYNQVLGVDAFMVSVALAIAIVFDAV 66


>UniRef50_A2E7S5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 744

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 149 VNKTQTVGAVLKINLSTPNALL*TSFKNNTPVRRW 45
           +N T T  A++  NLST    L T+F  N+PV  W
Sbjct: 522 INPTGTTYAIVSSNLSTSIEALPTNFTFNSPVFAW 556


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,723,598
Number of Sequences: 1657284
Number of extensions: 4392912
Number of successful extensions: 10020
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9976
length of database: 575,637,011
effective HSP length: 58
effective length of database: 479,514,539
effective search space used: 10069805319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)