Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L09
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    23   5.4  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    23   7.1  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    23   7.1  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    23   7.1  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    22   9.4  

>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 145 FTQICCYNSNFLLIIP 192
           F +  C+ +N+L+I+P
Sbjct: 12  FKEFACFGNNYLIILP 27


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 157 CCYNSNFLLIIP 192
           CC+N+NFL + P
Sbjct: 86  CCFNNNFLNLQP 97


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 34  KKNFQRRTGVLFLKLVYNRALGVDKFILSTAPTVCVLFTQICCYNSNFL 180
           K+ F+   G L + +       +    L     VC  F Q+C YNS ++
Sbjct: 23  KQQFKALFGCLTINIYLKIFTLISTPDLCNCRLVCRKFQQLCDYNSIYV 71


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 118 STAPTVCVLFTQICCYNSNFLLIIPPPPPCKETS 219
           S+AP      T       NF+    PPPP  ETS
Sbjct: 518 SSAPQSPSSNTSASVLTRNFVAHRDPPPPPTETS 551


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  KLVYNRALGVDKFILSTAPTVCVLFTQICCYNSN 174
           KL+ N ALG D +++    +V     ++ CY  N
Sbjct: 470 KLLINSALGFDSWLVMRHGSVLQKENRLGCYFCN 503


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 88  RALGVDKF--ILSTAPTVCVLFTQICCYNSNFLLI 186
           RA+ V KF  I+  A  VC L+  + C  + FL++
Sbjct: 484 RAINVLKFFFIIPIAKNVCYLWVFLYCPFTPFLVL 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,050,836
Number of Sequences: 5004
Number of extensions: 18970
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)