Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L09
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0128 - 20389375-20389781,20389988-20392787                       27   1.6  
06_03_0247 + 18679278-18679319,18679522-18679620,18679897-186801...    27   2.1  
03_06_0447 - 33989301-33989609,33990084-33990242,33990535-339906...    27   2.1  
01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516     27   2.8  
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177...    26   3.7  
03_05_1048 - 29950860-29951396,29951810-29952676                       26   3.7  
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257     25   8.5  
06_03_0143 + 17215975-17216745                                         25   8.5  
06_03_0094 + 16573075-16573268,16574636-16574996                       25   8.5  
05_05_0091 + 22319411-22320901                                         25   8.5  

>11_06_0128 - 20389375-20389781,20389988-20392787
          Length = 1068

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 133 VCVLFTQICCYNSNFLLIIPPPPPCKETSRNGVT 234
           +C+L   +C ++    L  PPPPP    S N  T
Sbjct: 8   ICLLLVCLCSHS--LALSPPPPPPSSPVSSNDAT 39


>06_03_0247 +
           18679278-18679319,18679522-18679620,18679897-18680100,
           18680334-18680431,18680554-18680641,18680728-18681078,
           18682093-18682623
          Length = 470

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 PTVCVLFTQICCYNSNFLLIIPPPPPCKETSRNGVTF 237
           PT+C ++ Q C Y +  +   PP    K+T    +TF
Sbjct: 191 PTLCPMYAQFCSYLNENITAFPP----KDTHCEQITF 223


>03_06_0447 -
           33989301-33989609,33990084-33990242,33990535-33990659,
           33991141-33991336,33991490-33991622,33992246-33992475
          Length = 383

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 127 PTVCVLFTQICCYNSNFLLIIPPPPP 204
           P +   F+QI      FL+ IPPPPP
Sbjct: 307 PAMRPSFSQIIRMLDAFLMTIPPPPP 332


>01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516
          Length = 522

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 103 DKFILSTAPTVCVLFTQICCYNSNFLLIIPPPPPCKET 216
           +K +   A   C +F++IC     F+  +PPP P   T
Sbjct: 262 EKAVGLMARAACAVFSRICTIFGAFVPGLPPPLPSAAT 299


>09_04_0736 -
           19815427-19815642,19815782-19816903,19817006-19817707,
           19817808-19817855,19817959-19818201,19819035-19819391
          Length = 895

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 148 TQICCYNSNFLLIIPPPPP 204
           TQ   YN    L +PPPPP
Sbjct: 754 TQHSAYNPEMTLNLPPPPP 772


>03_05_1048 - 29950860-29951396,29951810-29952676
          Length = 467

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 190 PPPPPCKETSRNGVTF 237
           PPPP  +ET ++GV F
Sbjct: 247 PPPPASRETGQSGVLF 262


>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
          Length = 421

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 157 CCYNSNFLLIIPPPPPCKET 216
           CCY S F    PPPP    T
Sbjct: 255 CCYASTFSRPPPPPPIAAST 274


>06_03_0143 + 17215975-17216745
          Length = 256

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 187 IPPPPPCKETSRNGVT 234
           +PPPPP  +   NG T
Sbjct: 182 LPPPPPPSQVGANGTT 197


>06_03_0094 + 16573075-16573268,16574636-16574996
          Length = 184

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 157 CCYNSNFLLIIPPPPPCKETSRN 225
           C  +   + + PPPPP  E +RN
Sbjct: 16  CLLHGCLVSLPPPPPPALEDARN 38


>05_05_0091 + 22319411-22320901
          Length = 496

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 103 DKFILSTAPTVCVLFTQICCYNSNFLLIIPPPPPCKE 213
           +K ++  A   C +F ++C      +  +PPP P  E
Sbjct: 219 EKAVILMARAACAVFVRVCVVFGAHVPGLPPPLPPAE 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,490,787
Number of Sequences: 37544
Number of extensions: 114012
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)