Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L08
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   163   2e-41
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   159   3e-40
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   0.89 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   2.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   4.7  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   4.7  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   6.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   6.3  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   8.3  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    25   8.3  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   8.3  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  163 bits (395), Expect = 2e-41
 Identities = 83/158 (52%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
 Frame = +3

Query: 18  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 197
           MGIDI   H RK +R++  S++V               T+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 198 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 371
           IS+S++A     K  + EG   V+VGTV++D RL TVPK++VAAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120

Query: 372 EILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 485
           E+LT DQLALRAPTG  TVL++G+++AREA RHFG  P
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGP 158


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  159 bits (385), Expect = 3e-40
 Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
 Frame = +3

Query: 18  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 197
           MGIDI   H +K +R++  S++V               T+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 198 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 371
           IS+S++A     K  + +    VVVGTV++D R+ TVPK+++AAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120

Query: 372 EILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 485
           E+LT DQLALRAPTG  TVLV+G+++AREA RHFG  P
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGP 158


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 188 PTSDFFVPFGTPHEEAYTRGFDRCSR 265
           P +D F+PF TP  +AY +   R  R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 249 LIAVVVGTVSNDVRLY-TVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 425
           L+ +VV  ++NDVRL+  V +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 426 VLVQGRRNAREAVRHFGPAPG 488
             V+G     EA  + G  PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 414 GRKTVLVQGRRNAREAVRHFGPAPGA 491
           G    L Q RR     V HFG APG+
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGS 869


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 192 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 371
           PP+  S L   +   T + L   ++  + +  R+ T+PK+  + L  +  +R  +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 387 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 482
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 74   LNFGAPNFPVVFMIDVDTHLD 12
            LN+ + + PV+  I +D+HLD
Sbjct: 1170 LNWDSVDVPVIIKISLDSHLD 1190


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 123 PSICTVLPIVSSTHPET*LRCAELSCRVYD 34
           P +CTVLPI+   +    +    + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 136 FVRLAKYLYSFTN 98
           F  LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 282 DVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNARE 458
           D  L  VP +      VT   R  +   GG      +   R+ T R+T+L  G RN+R+
Sbjct: 61  DANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNSRK 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,112
Number of Sequences: 5004
Number of extensions: 37214
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)