Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L08
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 169 8e-43
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 166 1e-41
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 154 3e-38
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 0.89
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 27 8.3
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 8.3
01_06_1752 + 39659914-39659942,39660195-39660306,39660348-396605... 27 8.3
01_01_0512 + 3735005-3735580 27 8.3
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 169 bits (412), Expect = 8e-43
Identities = 90/166 (54%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Frame = +3
Query: 18 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 194
MGID + ++K +RT +S+DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 195 PISLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARI 356
P+S+ RL R M K P R + IAV+VGTV++D R+Y VP M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 357 LAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAP 494
+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP 166
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 166 bits (403), Expect = 1e-41
Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Frame = +3
Query: 18 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 194
MGID + ++K +RT +S DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 195 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 374
P+SL RLA+ M+ E IAV+VGTV++D R+ +PKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 375 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAP 494
LTFDQLALRAP G TVL++G +NAREAVRHFG APG P
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVP 159
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 154 bits (374), Expect = 3e-38
Identities = 90/177 (50%), Positives = 110/177 (62%), Gaps = 18/177 (10%)
Frame = +3
Query: 18 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 194
MGID + ++K +RT KS DV T + FN +ILRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 195 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 374
P+SL RL R M+ +E IAV+VGTV++D R+Y VP M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 375 ILTFDQLALRAPTGRKT-----------------VLVQGRRNAREAVRHFGPAPGAP 494
LTFDQLALRAP G+ T VL++G +NAREAV+HFGPAPG P
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVP 175
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.3 bits (65), Expect = 0.89
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 323 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 162
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -2
Query: 490 APGAGPK*RTASRAFRRP*TSTVLRPVGARRANWSNVRISPPAAKMRARAFSVTCSAAT 314
A AG + R + RRP T + L P G+R A S+ RIS P + A + + S+++
Sbjct: 66 AEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSS-RISAPTSPSSAPSSPSSSSSSS 123
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 261 VVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLAL 401
++G++ DV ++ + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>01_06_1752 +
39659914-39659942,39660195-39660306,39660348-39660533,
39660918-39661022,39661147-39661230,39661416-39661531,
39661636-39661737,39661816-39661929,39662323-39662389,
39662457-39662510,39662899-39662973,39663057-39663092,
39663490-39663591
Length = 393
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 474 RSDELPHEHFGDPEPVLSYVQWAHGGLTGQTLESH 370
R+D + HF P ++SY++ G+T QTL +H
Sbjct: 55 RTDCILQLHF--PSSIISYIEDKDSGITTQTLLNH 87
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 170 VYEPYQPTSDFFVPFGTPHEEAYTRGFDRCSR 265
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,103
Number of Sequences: 37544
Number of extensions: 277029
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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