Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L08
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   188   1e-48
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  188 bits (459), Expect = 1e-48
 Identities = 93/159 (58%), Positives = 113/159 (71%)
 Frame = +3

Query: 18  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 197
           MGIDINHKHDR  RRT  KS++                T  KFN I+L+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 198 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 377
           +SL++LAR ++K   E    V + TV++D RLYTVPK++VAALHVTE ARARILAAGGEI
Sbjct: 61  LSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEI 120

Query: 378 LTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAP 494
           +T DQLAL++P G  TV +QG R+AREA +HFGPAPG P
Sbjct: 121 ITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVP 159


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -2

Query: 331 TCSAATVILGTV*SLTSLETVPTTTAIKPSRVGFFMWRAKRDKEI 197
           T S +TV +G+  + TS  ++ TT+A KPS    FM+   + KEI
Sbjct: 615 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEI 658


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -2

Query: 331 TCSAATVILGTV*SLTSLETVPTTTAIKPSRVGFFMWRAKRDKEI 197
           T S +TV +G+  + TS  ++ TT+A KPS    FM+   + KEI
Sbjct: 822 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEI 865


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 344  SFLSNV*CGYCHFRNSVKPHIIGDCANDYSDQTLAC-RLLHVACQTGQRNRRSVDTA 177
            S+L+N   G+C   NSV P       +D S Q  AC +   V+C  G   R    +A
Sbjct: 933  SYLANAFQGFCCTANSVCPDNADYLIDDQSQQPRACTQGTFVSCPNGYACRSLTSSA 989


>AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical
           protein Y105C5A.15 protein.
          Length = 737

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 131 HECQVQPDHPTEIVYE 178
           HECQVQ D PT ++ E
Sbjct: 575 HECQVQNDEPTALLRE 590


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/17 (52%), Positives = 16/17 (94%)
 Frame = +1

Query: 142 SSTRSSYGDCL*AVSTD 192
           SSTR+S+GDC+ ++S++
Sbjct: 569 SSTRNSFGDCMWSISSE 585


>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 492 VHQAPARSDELPHEHFGDPEPVLSY 418
           +  AP    E+ ++HFGD E +  Y
Sbjct: 164 ISTAPRYEPEMVYQHFGDEETIFGY 188


>Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical
           protein R05H5.7 protein.
          Length = 203

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 479 RPEVTNCLTSISATLNQYCLTSSG 408
           RP  TNC  S   + NQ C+ S+G
Sbjct: 101 RPHHTNCQQSGQCSSNQLCIDSNG 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,849
Number of Sequences: 27780
Number of extensions: 224648
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)