Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L06
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 28 0.74
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 2.3
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 2.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 2.3
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.0
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 3.0
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 3.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 4.0
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 27.9 bits (59), Expect = 0.74
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 346 SQKAESLVTTLPKLLLTRNNDFHCFYL 266
S+ + LV+T+P LL NDF C YL
Sbjct: 347 SKLIQDLVSTVPILLFYGENDFLCNYL 373
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 2.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 318 LCPSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITS 157
L SS P + A + + + ++ S +N +V SDTLAV + +S
Sbjct: 180 LAHESSEPSSSRHTADAQSITNASVHLHNSSSPLNRTPSVISDTLAVAITSNSS 233
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 134 INVRNQGGDVMQENITANVSEDTVTLEFM 220
INV G V E IT VSE TVT + +
Sbjct: 460 INVNKSFGSVNNETITEMVSEFTVTKDMI 488
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 2.3
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -1
Query: 309 SSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCIT--SPP*FRTL 136
SSSS T ASTS S + I + S +++S T S+ +L + S I S +
Sbjct: 595 SSSSTSSTFSSASTSSPSSISSSISSSSTILSS-PTPSTSSLMISSSSIISGSSSILSSS 653
Query: 135 ISSCKLIGRIN*YTNAILSIVNSIIS 58
IS+ + ++ Y+++++ ++++S
Sbjct: 654 ISTIPISSSLSTYSSSVIPSSSTLVS 679
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/51 (21%), Positives = 26/51 (50%)
Frame = -1
Query: 303 SSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITSPP 151
+SP +++F + +TNC TP+ L+ + +++A+ + + P
Sbjct: 603 ASPYVSSFAEACIQAIATNCNYSTPAELLRENIDYVVNSVALKLNTLDVSP 653
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 347 ESKSREFGNHSAQAPP 300
E+KSREFG S +PP
Sbjct: 69 EAKSREFGQRSEPSPP 84
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 3.0
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = -1
Query: 309 SSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITSPP*FRTLIS 130
SS++ T+ +S+SLV ST +PS ++S ++ S + + S TS F +L S
Sbjct: 115 SSAASSTTSTTSSSSLVSSTTLTSSSPS-AVSSTTSIPSISSTISSSVSTSS--FTSLSS 171
Query: 129 S 127
S
Sbjct: 172 S 172
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 4.0
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -1
Query: 309 SSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITSPP*FRTL-- 136
SSS +T I S+S++ S+ T S ++NS ++S T+ + ITS T
Sbjct: 3110 SSSVLNSSTAITSSSILNSSTP--ITSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTP 3167
Query: 135 ISSCKLIGRIN*YTNAILSIVNS 67
I+S ++ T++ SIVNS
Sbjct: 3168 ITSSSVLNSSTAITSS--SIVNS 3188
Score = 25.4 bits (53), Expect = 4.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -1
Query: 312 PSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITSPP*FR--T 139
P +SS + T TS + T S ++NS ++S ++ + ITS T
Sbjct: 3419 PITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSST 3478
Query: 138 LISSCKLI-GRIN*YTNAILSIVNSIIS 58
ISS +I + ++++LS +SI+S
Sbjct: 3479 PISSSTVITSSVVIGSSSVLSYASSIVS 3506
Score = 24.6 bits (51), Expect = 6.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 321 PLCPSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITS 157
P+ SS T +ST+L ST+ T S ++NS ++S T+ + ITS
Sbjct: 515 PITSSSVLNSSTPITSSTALNTSTSI---TSSSVLNSSTPITSSTVVNTSTPITS 566
Score = 24.6 bits (51), Expect = 6.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 321 PLCPSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITS 157
P+ SS T +ST+L ST+ T S ++NS ++S T+ + ITS
Sbjct: 1283 PITSSSVLNSSTPITSSTALNTSTSI---TSSSVLNSSTPITSSTVVNTSTPITS 1334
Score = 24.6 bits (51), Expect = 6.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 321 PLCPSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITS 157
P+ SS T +ST+L ST+ T S ++NS ++S T+ + ITS
Sbjct: 2627 PITSSSVLNSSTPITSSTALNTSTSI---TSSSVLNSSTPITSSTVVNTSTPITS 2678
Score = 24.6 bits (51), Expect = 6.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 321 PLCPSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITS 157
P+ SS T +ST+L ST+ T S ++NS ++S T+ + ITS
Sbjct: 2855 PITSSSVLNSSTPITSSTALNTSTSI---TSSSVLNSSTPITSSTVVNTSTPITS 2906
Score = 24.6 bits (51), Expect = 6.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 321 PLCPSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITS 157
P+ SS T +ST+L ST+ T S ++NS ++S T+ + ITS
Sbjct: 2951 PITSSSVLNSSTPITSSTALNTSTSI---TSSSVLNSSTPITSSTVVNTSTPITS 3002
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -1
Query: 309 SSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITS 157
SS++ +T I S+S++ S+ T S ++NS ++S ++ + ITS
Sbjct: 3074 SSTALNTSTPITSSSVLNSSTA--ITSSSIVNSSTPITSSSVLNSSTAITS 3122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,555
Number of Sequences: 5004
Number of extensions: 38375
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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