Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L06
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0154 + 2298432-2299415                                           29   2.2  
03_05_0171 + 21486473-21486775,21486835-21486912,21487223-214874...    27   9.0  
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884...    27   9.0  
02_04_0620 - 24491055-24491710,24491794-24491986,24492165-244939...    27   9.0  

>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 309 SSSSPGITTFIASTSLVKSTNCEIYTPSFLI 217
           SSSSP IT FIA + ++ + N  ++ P FL+
Sbjct: 11  SSSSPCIT-FIAESMILPTRNIRLFAPIFLL 40


>03_05_0171 +
           21486473-21486775,21486835-21486912,21487223-21487407,
           21487507-21487897
          Length = 318

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 236 YISQLVDFTNEVEAMKVVIPGE 301
           Y S+L+DF N+ E    V PGE
Sbjct: 254 YYSKLLDFLNDCEEWGTVAPGE 275


>03_02_0710 +
           10587969-10588069,10588181-10588262,10588362-10588414,
           10588828-10589315,10589415-10589575,10589699-10589896,
           10590091-10590277,10590355-10590611
          Length = 508

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 140 VRNQGGDVMQENITANVSEDTVTLEFMRNDGVYISQLVDF 259
           V++  G+V +++    +++D   LE +  DGV+  +L DF
Sbjct: 235 VKDHRGEVYKKHHPPALADDVWRLEKIGKDGVFHKKLADF 274


>02_04_0620 -
           24491055-24491710,24491794-24491986,24492165-24493991,
           24494245-24494304,24494808-24494916,24496393-24496522,
           24498740-24498848
          Length = 1027

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 403 FLSQFSHSIGSDEVCLGGMS---QKAESLVTTLPKLLLTRNNDFHCFYLISKIN 251
           FL + SH +G D +CL G      +  S++  L +L +  +    C YL+ + N
Sbjct: 44  FLCRDSHGMGCDVMCLVGFGLCWMENASILFHLVELWIPYSRRLSCSYLLPEGN 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,256,384
Number of Sequences: 37544
Number of extensions: 238526
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)