Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L06
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC024817-14|AAY86301.1|  354|Caenorhabditis elegans Hypothetical...    28   3.5  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical...    27   4.6  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    27   4.6  
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    27   4.6  
AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical...    27   8.1  

>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 309 SSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFSCITSPP 151
           S+++   TT   STS + +T+    TP+    +  T +SD L  +    T PP
Sbjct: 283 STTTQTTTTVPTSTSTISTTSTTTTTPTTTTTTTSTTTSDDLLWVKITTTPPP 335


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 321  PLCPSSSSPGITTFIASTSLVKSTNCEIYTPSFLINSRVTVSSDTLAVMFS 169
            P+C S+++P  T    S+  + S +   YTP    +S  T    TL+  FS
Sbjct: 1165 PVCISTTTPSSTPSSTSSPTLPSGSSTEYTPRATQSSTTTSYGSTLSSDFS 1215


>AC024817-14|AAY86301.1|  354|Caenorhabditis elegans Hypothetical
           protein Y54G2A.45 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 406 IFLSQFSHSIGSDEVCLG-GMSQKAESLVTTLPKLLLTRNNDFHC 275
           +F + FSH++ S E CLG G    A+S +   P  + T     +C
Sbjct: 9   LFFAGFSHALKSCETCLGSGYHYCADSKLCNTPACVNTIKEVLNC 53


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 304  GAWAEWLPNSLLFDSCRPGRLHHSRCYG*TETEKSWHCTCCGGGQGL 444
            G + +W  NS   +SC  G      C    + E+SW C C  G  GL
Sbjct: 2744 GEYCQWRSNSCHDESCNTGI-----CL---DNEESWQCVCPLGTTGL 2782


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 304  GAWAEWLPNSLLFDSCRPGRLHHSRCYG*TETEKSWHCTCCGGGQGL 444
            G + +W  NS   +SC  G      C    + E+SW C C  G  GL
Sbjct: 2744 GEYCQWRSNSCHDESCNTGI-----CL---DNEESWQCVCPLGTTGL 2782


>AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25b protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 125 QLLINVRNQGGDVMQENITANVSEDTVT 208
           Q +IN++N GG   QEN+T + +  T T
Sbjct: 236 QSMINMQNGGGGGGQENMTTSTTTTTTT 263


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 125 QLLINVRNQGGDVMQENITANVSEDTVT 208
           Q +IN++N GG   QEN+T + +  T T
Sbjct: 553 QSMINMQNGGGGGGQENMTTSTTTTTTT 580


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
           protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 304 GAWAEWLPNSLLFDSCRPGRLHHSRCYG*TETEKSWHCTCCGGGQGL 444
           G + +W  NS   +SC  G      C    + E+SW C C  G  GL
Sbjct: 294 GEYCQWRSNSCHDESCNTGI-----CL---DNEESWQCVCPLGTTGL 332


>AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical
           protein Y57A10A.16 protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 301 LTRNNDFHCFYLISKIN*L*NIYSIVP 221
           L R+ND HC YL+ + + + N Y  VP
Sbjct: 100 LERSNDDHCTYLLIEKDPMVNTYISVP 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,614
Number of Sequences: 27780
Number of extensions: 213629
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)