Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L05
         (504 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IDC3 Cluster: Putative uncharacterized protein Phat60...    36   0.39 
UniRef50_Q7RRN5 Cluster: Bromodomain, putative; n=13; Aconoidasi...    36   0.39 
UniRef50_UPI000023D3DF Cluster: hypothetical protein FG09676.1; ...    36   0.52 
UniRef50_Q8ILY5 Cluster: Putative uncharacterized protein; n=2; ...    34   1.6  
UniRef50_Q0P3M5 Cluster: DNA-directed RNA polymerase subunit bet...    33   4.8  
UniRef50_Q9ZZN7 Cluster: 30S ribosomal protein S3; n=1; Cyanidio...    32   6.4  

>UniRef50_Q8IDC3 Cluster: Putative uncharacterized protein Phat60;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            Phat60 - Plasmodium falciparum (isolate 3D7)
          Length = 1559

 Score = 36.3 bits (80), Expect = 0.39
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 181  QQDVNVPTHINIMVFEYESSNTVYNTTITLKFHRIRFSSYC-LNDEQIYFITIID 342
            Q+ +    H+NI++  Y+   ++YN  ++      RF S   L DEQ+Y + II+
Sbjct: 1054 QEQLMFIIHLNIILLSYKIVKSIYNIFLSYSLFIFRFCSLSNLKDEQVYLLCIIN 1108


>UniRef50_Q7RRN5 Cluster: Bromodomain, putative; n=13;
            Aconoidasida|Rep: Bromodomain, putative - Plasmodium
            yoelii yoelii
          Length = 4805

 Score = 36.3 bits (80), Expect = 0.39
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 68   WYYPYFHSLKTILAFMLLLGHRFVIKTLNAKCHNISVYNKMLMC 199
            WY P+F+++K +++      HRF I     + H++S+ NK+  C
Sbjct: 1047 WYSPHFYNIKVLISLKEF--HRFDILDKKKEVHDLSILNKLTKC 1088


>UniRef50_UPI000023D3DF Cluster: hypothetical protein FG09676.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG09676.1 - Gibberella zeae PH-1
          Length = 715

 Score = 35.9 bits (79), Expect = 0.52
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = +2

Query: 32  MENKRVPATSSAWYYPYFHSLKTILAFMLLLGHRFVIKTLNAKCHNISVYNKML----MC 199
           ++ +   A +   Y+     +   L FMLL+  + +    N K HN    N ML    +C
Sbjct: 510 IQGQGAEALTDDTYWQRHREIDNDLKFMLLMLPKKLCLPTNYKSHNAVFVNVMLHTATIC 569

Query: 200 LHTSILWFLNMNL--VTQYIILLS 265
           LH + LW +  NL  +  Y+I LS
Sbjct: 570 LHRAALWRMKSNLQGLPSYMIRLS 593


>UniRef50_Q8ILY5 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1951

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -1

Query: 252 IYCVTRFIFKNHNIDVCRHINILLYTLML*H----FAFKVLITNLCPSSNIKA 106
           IY +T+F + N N D+C +    +Y + L +    + F  +I +  P+SNIKA
Sbjct: 317 IYLITKFKYTNKNTDLCTYYIQFIYLITLQYNVLNYFFHHIIFDSSPNSNIKA 369


>UniRef50_Q0P3M5 Cluster: DNA-directed RNA polymerase subunit beta';
           n=1; Ostreococcus tauri|Rep: DNA-directed RNA polymerase
           subunit beta' - Ostreococcus tauri
          Length = 740

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 80  YFHSLKTILAFMLLLGHRFVIKTLNAKCHNISVYNKMLMCLHTSILWFLN 229
           YF +   +LA +L +  + + +T++ + +  S Y     CLH  + W++N
Sbjct: 134 YFRNSPNVLAALLNMRSQEIDETIHFQTYTPSKYGTQNYCLHGGVQWYVN 183


>UniRef50_Q9ZZN7 Cluster: 30S ribosomal protein S3; n=1;
           Cyanidioschyzon merolae|Rep: 30S ribosomal protein S3 -
           Cyanidioschyzon merolae (Red alga)
          Length = 282

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 229 YESSNTVYNTTITLKFHRIRFSSYCLNDEQIYFIT-IIDFRCLSSTLCRRVHGASSKI 399
           Y SSN+++++T +  +    + S+C+N    +F T I+  R L   +  R+HG  ++I
Sbjct: 182 YRSSNSLHSSTRSETYSGNYYCSHCINSYDRFFSTKIVLLRGLKIIIRGRLHGLQNQI 239


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,845,213
Number of Sequences: 1657284
Number of extensions: 9541802
Number of successful extensions: 19664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19653
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)