Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L05
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   2.8  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   3.7  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   4.9  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    25   4.9  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   8.5  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 196 VPTHINIMVFEYESSNTVYNTTITLKFHRIRFS 294
           +PT +   V  + SSN+ Y TT+T     + F+
Sbjct: 409 IPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFT 441



 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 196 VPTHINIMVFEYESSNTVYNTTIT 267
           +PT +   V  + SSN+ Y TT+T
Sbjct: 355 IPTSVPSSVSSFTSSNSSYTTTLT 378



 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 196 VPTHINIMVFEYESSNTVYNTTITLKFHRIRFS 294
           +PT     V  + SSN+ Y TT+T     + F+
Sbjct: 463 IPTSAPSSVSSFTSSNSSYTTTLTASNTTVTFT 495


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 238 SNTVYNTTITLKFHRIRFSSYCLNDEQIYFITIIDFRCLSSTLCRRVH--GASS 393
           +   Y+TT  LK H +  +SYC N     FI   +   + S L +RV   GA+S
Sbjct: 52  AQNAYHTTSVLKHHNVSNTSYC-NLSPSLFIKFAE--DVLSNLAKRVEIWGANS 102


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +2

Query: 26  TLMENKRVPATSSAWYYPYFHSLKTILAFMLLLGHRFVIKTLNAKCHNISVYNKMLMCLH 205
           T M +  V  T     +P  +   T+  F++     F+  + N     + V N +++C+ 
Sbjct: 453 TTMAHILVVTTRERINFPELNEWITLHRFVISFFTVFIQMSGNIGKEILKVCNPLIVCIG 512

Query: 206 TSILWFLNMNLVTQY 250
            +I W+    L + Y
Sbjct: 513 LAITWYHQQLLSSMY 527


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 350 VYRRHYVDVFMGPPPRLKISND 415
           +  +H VDV M P P + +S+D
Sbjct: 158 IAHKHGVDVLMNPAPAIPLSHD 179


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 169 HKCIQQDVNVPTHINIM-VFEYE----SSNTVYNTTITLKFHR 282
           HK I+ D N+P +  IM +  YE    S+ +V N +  L F +
Sbjct: 327 HKAIKPDTNLPFYGGIMGIIGYECSDLSTKSVSNASFPLDFQQ 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,664
Number of Sequences: 5004
Number of extensions: 42514
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)