Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L04
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 157 7e-40
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 157 7e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 157 7e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 42 4e-05
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 32 0.026
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.75
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.75
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 26 1.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 1.7
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 4.0
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 4.0
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 24 7.0
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 7.0
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 7.0
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 24 9.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 9.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 24 9.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 157 bits (380), Expect = 7e-40
Identities = 69/85 (81%), Positives = 76/85 (89%)
Frame = +2
Query: 11 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
EVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+L
Sbjct: 286 EVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345
Query: 191 NHPGQISNGYTPVLDCHTAHIACKF 265
NHPGQIS GY+PVLDCHTAHIACKF
Sbjct: 346 NHPGQISAGYSPVLDCHTAHIACKF 370
Score = 58.4 bits (135), Expect = 4e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +3
Query: 264 FAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 380
FAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+
Sbjct: 370 FAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPM 408
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 157 bits (380), Expect = 7e-40
Identities = 69/85 (81%), Positives = 76/85 (89%)
Frame = +2
Query: 11 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
EVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+L
Sbjct: 286 EVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345
Query: 191 NHPGQISNGYTPVLDCHTAHIACKF 265
NHPGQIS GY+PVLDCHTAHIACKF
Sbjct: 346 NHPGQISAGYSPVLDCHTAHIACKF 370
Score = 58.4 bits (135), Expect = 4e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +3
Query: 264 FAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 380
FAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+
Sbjct: 370 FAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPM 408
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 157 bits (380), Expect = 7e-40
Identities = 69/85 (81%), Positives = 76/85 (89%)
Frame = +2
Query: 11 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
EVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+L
Sbjct: 286 EVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIIL 345
Query: 191 NHPGQISNGYTPVLDCHTAHIACKF 265
NHPGQIS GY+PVLDCHTAHIACKF
Sbjct: 346 NHPGQISAGYSPVLDCHTAHIACKF 370
Score = 58.4 bits (135), Expect = 4e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +3
Query: 264 FAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 380
FAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+
Sbjct: 370 FAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPM 408
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.5 bits (93), Expect = 4e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +2
Query: 38 EALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNG 217
E + ++ GD V V+ +++ GYV +KN P F AQ+ +L P ++ G
Sbjct: 519 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTG 576
Query: 218 YTPVLDCHTA 247
Y+ V+ HTA
Sbjct: 577 YSCVMHIHTA 586
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 32.3 bits (70), Expect = 0.026
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 14 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 124
V +EM + L AV GDN G ++++ ++L+RG +
Sbjct: 298 VTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.75
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 332 NGFRVVLC*FTSTTVDFLFDFGKICRLC 249
+GFR+ T TVDFL D+ K RLC
Sbjct: 303 DGFRIDKA--TQMTVDFLVDWAKSVRLC 328
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.75
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 352 MAASPDLMDLGLSSVDLPVRRSTFS 278
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 1.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 193 SPRSNIKRIHTCIGLPHSPHSLQILPKSKRKSTVVLVNQQRTTLNPLNLV 342
SP I + +S + QI PKSK + VVL+ T L+P + V
Sbjct: 411 SPNVPINNFTSTCAFENSHLNFQITPKSKTRDQVVLL-ATYTNLSPYDTV 459
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 30 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 161
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 4.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 235 LPHSPHSLQILPKSKR 282
LPH P LQ+L +SKR
Sbjct: 297 LPHLPRELQVLLESKR 312
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 4.0
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +3
Query: 60 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 239
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 240 TQPT*PAN 263
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 24.2 bits (50), Expect = 7.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 148 TQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQILPKSKRK 285
+QG C A +PR N++ ++ + P L L S+R+
Sbjct: 1174 SQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSLTNSERE 1219
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 188 LNHPGQISNGYTPVLDCHTAHIACK 262
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 124 NVTTAQFLDRYVFDVETNIVTGYS 53
++T F+D YV +++ IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 264 NLQAMWAVWQSNTGVYPFDI 205
N + MWAVW + + FD+
Sbjct: 295 NFKIMWAVWGTMRTINSFDL 314
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 316 SSVDLPVRRSTFSLISAKFAGYVGC 242
SSV + V RS + IS K +GY C
Sbjct: 932 SSVSIAVDRSDSNYISIKESGYAIC 956
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 23.8 bits (49), Expect = 9.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 238 PHSPHSLQILPK-SKRKSTVVLVNQQRTTLNPLNLVMPPLS 357
P+ SL + S+ S V V++ L+P N+ +PPLS
Sbjct: 446 PNKETSLSLYSSFSEYNSLEVGVDRYELGLDPQNITVPPLS 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,232
Number of Sequences: 5004
Number of extensions: 35654
Number of successful extensions: 100
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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