Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L04
(380 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 152 9e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 152 9e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 152 9e-38
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 43 9e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.001
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 31 0.37
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 29 0.85
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 29 0.85
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 29 0.85
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 28 2.6
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 28 2.6
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 28 2.6
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 4.5
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 4.5
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 4.5
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 27 4.5
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 27 4.5
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 4.5
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 4.5
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 6.0
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 27 6.0
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 7.9
AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical ... 26 7.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 152 bits (368), Expect = 9e-38
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 11 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
EVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++
Sbjct: 254 EVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIM 313
Query: 191 NHPGQISNGYTPVLDCHTAHIACKF 265
NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 314 NHPGQISNGYTPVLDCHTAHIACKF 338
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +3
Query: 264 FAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 380
F E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPL
Sbjct: 338 FNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPL 376
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 152 bits (368), Expect = 9e-38
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 11 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
EVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++
Sbjct: 288 EVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIM 347
Query: 191 NHPGQISNGYTPVLDCHTAHIACKF 265
NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 348 NHPGQISNGYTPVLDCHTAHIACKF 372
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +3
Query: 264 FAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 380
F E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPL
Sbjct: 372 FNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPL 410
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 152 bits (368), Expect = 9e-38
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 11 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL 190
EVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++
Sbjct: 288 EVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIM 347
Query: 191 NHPGQISNGYTPVLDCHTAHIACKF 265
NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 348 NHPGQISNGYTPVLDCHTAHIACKF 372
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +3
Query: 264 FAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPL 380
F E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPL
Sbjct: 372 FNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPL 410
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 42.7 bits (96), Expect = 9e-05
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +2
Query: 47 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 226
+ V GDN+ F +K + EL+ G++ + G F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSC 450
Query: 227 VLDCHTA 247
VL +A
Sbjct: 451 VLHIQSA 457
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 14 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 193
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 194 HPGQISNGYTPVL 232
HP I Y +L
Sbjct: 479 HPTTIKPNYQAML 491
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 30.7 bits (66), Expect = 0.37
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 199 RSNIKRIHTCIGLPHSPHSLQILPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPP 372
+ N ++ T I L +L LPK+ T V + TT+ P +PP +T PP
Sbjct: 243 KENSRKSTTFINLVEKSPNLA-LPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTVPP 299
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.5 bits (63), Expect = 0.85
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 14 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 124
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 300 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.5 bits (63), Expect = 0.85
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 14 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 124
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.5 bits (63), Expect = 0.85
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 14 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 124
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 14 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 193
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLC 508
Query: 194 H 196
H
Sbjct: 509 H 509
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 132 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 37
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 132 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 37
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 132 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 37
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 132 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 37
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 137 KNNPPRGAAD-FTAQVIVLNHP 199
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 137 KNNPPRGAAD-FTAQVIVLNHP 199
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 180 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTAS 49
T A +AAP GGLF + T P T T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 147 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 236
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 20 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 139
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 20 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 139
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 99 TDTFLTLKPTLSPGTASCRASWCISTD 19
T FLTL+ T T C+ SWC D
Sbjct: 42 TSLFLTLQSTGPEMTNLCKKSWCDKVD 68
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 267 AEIKEKVDRRTGKSTEDNPKS 329
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 47 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRG 157
+EA+P N + ++V RR +VAGD ++N G
Sbjct: 983 KEALPQGNQERDCRSVLQNRQRRCFVAGDERSNEQPG 1019
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 26.6 bits (56), Expect = 6.0
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 79 QRQKRICQGIAPWLRC-----RRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPH 243
+RQ IC P LRC + +KQ T C L S++ A+ I+R H
Sbjct: 1563 ERQHEICFTQKPVLRCQNGKSQESKKQKTSVYC-LPSSNSWARRQMREIRREPLAQWPEH 1621
Query: 244 SPHSLQILPKSKRKSTVVLVNQQ 312
+L+ P+ + ++ V V+Q+
Sbjct: 1622 KLRNLRDQPQMEERTVRVAVDQK 1644
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 110 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQI 208
RR Y D P+GA DF AQ++ PG I
Sbjct: 64 RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGYI 94
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 126 AT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSAS 4
+T P ++ T T+ T++PG C+++ ++ +LTS +
Sbjct: 548 STVPVTSTFASTTTTVPITVAPGQCYCQSNVAVAFELTSGT 588
>AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical
protein ZK994.1 protein.
Length = 554
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 124 NVTTAQFLDRYVFDVETN 71
N TTA FLD Y+F V T+
Sbjct: 384 NSTTATFLDDYIFHVPTS 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,564
Number of Sequences: 27780
Number of extensions: 222750
Number of successful extensions: 697
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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