Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L03
         (466 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049853F Cluster: hypothetical protein 370.t00001;...    33   2.3  
UniRef50_A6C5R5 Cluster: Phenylalanyl-tRNA synthetase, alpha sub...    32   5.4  
UniRef50_Q7XQP0 Cluster: OSJNBa0084A10.15 protein; n=3; Oryza sa...    32   7.1  
UniRef50_O17575 Cluster: Putative uncharacterized protein; n=2; ...    32   7.1  

>UniRef50_UPI000049853F Cluster: hypothetical protein 370.t00001;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 370.t00001 - Entamoeba histolytica HM-1:IMSS
          Length = 710

 Score = 33.5 bits (73), Expect = 2.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 15  TSETICQFCNYFNLNTYNWRKFCDFEPTLRERTNHVVTPHLSMIILS 155
           +SE++ +FC  FN  T N   +C F   L  + +++  P  + I+ S
Sbjct: 47  SSESVIKFCTNFNPETMNCLSYCFFSKQLFNKVSNIRNPMFNSILKS 93


>UniRef50_A6C5R5 Cluster: Phenylalanyl-tRNA synthetase, alpha
           subunit; n=1; Planctomyces maris DSM 8797|Rep:
           Phenylalanyl-tRNA synthetase, alpha subunit -
           Planctomyces maris DSM 8797
          Length = 327

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = +3

Query: 21  ETICQFCNYFNLNTYNWRKFCDFEPTLRERTNHVVTPHLSMIILSLWC*HTYGPDPEYCT 200
           E   +F N+  LNT +W    D   +      +V+  H S           +GP P    
Sbjct: 132 EVETEFFNFDALNTPDWHPARDMHDSFYTTVGNVLRTHTSAFQTRAM--KQFGPPPLRAM 189

Query: 201 ADGRCYQSPK**CESFP 251
             GRCY+  +     FP
Sbjct: 190 TSGRCYRRDEIDASHFP 206


>UniRef50_Q7XQP0 Cluster: OSJNBa0084A10.15 protein; n=3; Oryza
           sativa|Rep: OSJNBa0084A10.15 protein - Oryza sativa
           (Rice)
          Length = 456

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 441 YGPDSGHGISSGRAFCLFTNDYHIRDNKKDTLKIDTLLVCKSNRCFENR 295
           Y  D    ++    F   T++YH+  +K+D    D L+   S+RCFE+R
Sbjct: 233 YHADDDVQVTYAGKFFRITHNYHVATHKRD----DVLVYWSSSRCFEHR 277


>UniRef50_O17575 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 3118

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 375 HIRDNKKDTLKIDTLLVCKSNRCFENRFVNLRFE-SIQKSIFLERIHITT*G 223
           HIRD    T +  TLLVC SN   EN     RF   I+  IF + I + + G
Sbjct: 457 HIRDRNPQTART-TLLVCDSNNVDENSCSTPRFRIPIRNEIFPQSISLKSSG 507


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,347,646
Number of Sequences: 1657284
Number of extensions: 7840642
Number of successful extensions: 17448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17444
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)