Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L03
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   1.1  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   4.3  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   4.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   5.7  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.7  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   7.5  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    25   7.5  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    24   9.9  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    24   9.9  

>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -3

Query: 401  LFAYLQMIIISETTKRTL*KSILY*FVSLIDVLRIDSLILDSNRFKNQSFWKGFTSLLRG 222
            L  YL   I +E   +   K +L     + ++LR+ SLI D   F+N    K    +L  
Sbjct: 886  LIVYLLKYIFTEGDPKFS-KCVLVFLPGISEILRVKSLIEDMPMFRNHR--KFCIYMLHS 942

Query: 221  LITSTVRRTIFRI 183
             ++S  ++++F I
Sbjct: 943  TLSSAQQQSVFNI 955


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 335 LY*FV-SLIDVLRIDSLILDSNRFKNQSFWKGF 240
           LY F+   +   +ID L +D+ +   ++FW GF
Sbjct: 207 LYNFIHDQVKQFKIDGLRVDATKHVRRTFWPGF 239


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  NWRKFCDFEPTLRERTNHVVTPHLSMIILSLW 161
           N+ K+  F P +RE T H V    S  I  LW
Sbjct: 316 NFEKYLSFSPHIREPTIHFVLYVPSPQIQPLW 347


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 75  KFCDFEPTLRERTNHVVTPHLSMIILSL 158
           +FC F+PTL ++      P+L+  +L +
Sbjct: 51  QFCQFQPTLLDKLLSKYVPNLASYLLKV 78


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 272 DSNLRLTNRFSKHRLDLQTN 331
           +SNL +T+R  +HRL L+ N
Sbjct: 54  NSNLAVTSRSLRHRLSLRNN 73


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 199 VQYSGSGPYVC*HHKDNIIIDK 134
           VQ SGSGP++  H  D I++D+
Sbjct: 872 VQLSGSGPFLLKH--DKILVDE 891


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 421 WYIERTSFLPIYK*LSYQRQQKGHSKNR 338
           WY  + S L   K L YQ   + H K R
Sbjct: 157 WYYAQDSILKSLKTLGYQNVYESHLKER 184


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   RKNTSETICQFCNYFNLNTYNWRKFCDFEPTLRERT-NHVVTPHLSMIILSLWC*HTYGP 182
           R+NTSE ICQ     N+   N+     F+    E T N  V  H    + ++   + Y P
Sbjct: 121 RENTSEDICQSEENANMLKLNFYHSLGFDLETAENTGNKRVIIHTENDLQTVQISNKYSP 180


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 300 NRFVNLRFESIQKSIFLERIHITT*GT 220
           N+F N+R +   K + LE+IH  + GT
Sbjct: 327 NKFDNIRDKERCKRLILEQIHTLSPGT 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,457
Number of Sequences: 5004
Number of extensions: 36117
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)