Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L03
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800     32   0.26 
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    29   1.8  
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445...    29   2.4  
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858...    27   9.8  
05_01_0347 - 2717275-2717613,2717994-2718077,2718185-2718247,271...    27   9.8  

>04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800
          Length = 456

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 441 YGPDSGHGISSGRAFCLFTNDYHIRDNKKDTLKIDTLLVCKSNRCFENR 295
           Y  D    ++    F   T++YH+  +K+D    D L+   S+RCFE+R
Sbjct: 233 YHADDDVQVTYAGKFFRITHNYHVATHKRD----DVLVYWSSSRCFEHR 277


>05_05_0338 + 24204301-24206262,24206337-24206495,24206864-24207035,
            24207544-24207842,24208301-24208355,24208438-24208487,
            24208522-24208827
          Length = 1000

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = -3

Query: 299  IDSLILDSNRFKNQS--FWKGFTSLLRGLITSTVRRTIFRIRSVRVLTP*RQYNHRQVWG 126
            I++LI +S  F  +S  ++ G  ++L  +   T+R  +   +   +LT   + N R++  
Sbjct: 852  INTLIFNSFVFCQESVLYFNGNFTILEKVSGGTLRYFLKEGKISLILTVFNEINCREMEK 911

Query: 125  NNMIGSLS*SWLKVAKLSPIISIQVKIVAKLTNCFTSVLP 6
             N++  +  +W+ V  L+  +  QV I+ +    F + +P
Sbjct: 912  INVLQGIFRNWIFVGILTATVIFQV-IIVEFLGTFANTVP 950


>04_04_0416 + 25042937-25043350,25044038-25044238,25044343-25044525,
            25044975-25045084,25045317-25045376,25045620-25045911,
            25046780-25046967,25047275-25048149,25048846-25049805,
            25050025-25050068,25050860-25050925,25051176-25051364
          Length = 1193

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 381  DYHIRDNKKDTLKIDTLLVCK---SNRCFENRFVNLRFESIQKSIFLE 247
            +  IR+N K+T++++  + CK      CF+     + +  +   I+LE
Sbjct: 1056 EVQIRNNTKETIRMNLSISCKDVAGENCFDENSATVLWAGVLSDIYLE 1103


>11_03_0107 +
           10084234-10084348,10084830-10084834,10085351-10085803,
           10086143-10086267,10087282-10087345,10087452-10087508,
           10088475-10088485,10089923-10090802
          Length = 569

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 253 FGKDSHHYLGD**HRPSAVQYSGSG 179
           +GK +HH+LGD  H  +  Q +G G
Sbjct: 17  WGKSAHHWLGDSHHCSTVEQATGLG 41


>05_01_0347 -
           2717275-2717613,2717994-2718077,2718185-2718247,
           2718350-2718488,2719118-2719219,2719324-2719424,
           2719915-2719981,2720074-2720120,2720246-2720440,
           2720523-2720569,2721242-2721339,2722219-2722337,
           2722438-2722611
          Length = 524

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 20/93 (21%), Positives = 39/93 (41%)
 Frame = -3

Query: 464 SINAVNTSTDRTADMVYRADELFAYLQMIIISETTKRTL*KSILY*FVSLIDVLRIDSLI 285
           +I A+ ++TD    +     +    L  ++  E         +L+  +  ID+   DSL+
Sbjct: 131 AIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIEDIDIANFDSLV 190

Query: 284 LDSNRFKNQSFWKGFTSLLRGLITSTVRRTIFR 186
           L +  F     +  FTS L G++   +   I +
Sbjct: 191 LLA--FIGNFLYLFFTSTLLGVVAGLLSAYIIK 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,000
Number of Sequences: 37544
Number of extensions: 199813
Number of successful extensions: 358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)