Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L03
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    32   0.23 
Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical p...    28   2.9  
Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81017-12|CAD91635.1|  394|Caenorhabditis elegans Hypothetical p...    28   3.8  
Z78537-3|CAD91626.1|  394|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    28   3.8  

>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 375 HIRDNKKDTLKIDTLLVCKSNRCFENRFVNLRFE-SIQKSIFLERIHITT*G 223
           HIRD    T +  TLLVC SN   EN     RF   I+  IF + I + + G
Sbjct: 457 HIRDRNPQTART-TLLVCDSNNVDENSCSTPRFRIPIRNEIFPQSISLKSSG 507


>Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical
           protein T12G3.2c protein.
          Length = 888

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 321 YKLIKYRFLECPFCCL*YDNHL*IGKKLVRSIYHVRCP-VRTCINSIN 461
           +KL+KY+ L+CP CC   D     G + + +  +V CP +R   NS N
Sbjct: 532 FKLLKYK-LQCPDCCSGQDGARVNGVQQIVTFKNVLCPHLRYECNSTN 578


>Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical
           protein T12G3.2b protein.
          Length = 912

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 321 YKLIKYRFLECPFCCL*YDNHL*IGKKLVRSIYHVRCP-VRTCINSIN 461
           +KL+KY+ L+CP CC   D     G + + +  +V CP +R   NS N
Sbjct: 532 FKLLKYK-LQCPDCCSGQDGARVNGVQQIVTFKNVLCPHLRYECNSTN 578


>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical
           protein T12G3.2a protein.
          Length = 928

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 321 YKLIKYRFLECPFCCL*YDNHL*IGKKLVRSIYHVRCP-VRTCINSIN 461
           +KL+KY+ L+CP CC   D     G + + +  +V CP +R   NS N
Sbjct: 532 FKLLKYK-LQCPDCCSGQDGARVNGVQQIVTFKNVLCPHLRYECNSTN 578


>Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.11 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 290 LILDSNRF--KNQSFWKGFTSLLRGLITSTVRRTIFRIRSVRVLTP*RQYNHRQ 135
           L+L SN F  KN SF+    SL+ G++ +T+   +   R + V  P   +N+R+
Sbjct: 68  LLLCSNNFAVKNLSFYLLQASLIMGIVRATIALLLTLERFIAVFFPIIFHNNRR 121


>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 275 NRFKNQSFWKGFTSLLRGLITSTVRRTIFRIRSVRVLTP*RQYNHRQ 135
           N  KN SF+  + S   G + +TV  +I   R+V  L P   YN+RQ
Sbjct: 74  NFIKNLSFYLIWISSSFGSLRATVALSISIERAVATLFPIFYYNYRQ 120


>Z81017-12|CAD91635.1|  394|Caenorhabditis elegans Hypothetical
           protein C09F12.3 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 211 DVISPLSSDVNPFQKD*FLNRFESKINESILKTSIRLTN 327
           DV+S +S+ VN F    F NR +  I   + KTS  L+N
Sbjct: 330 DVLSMISASVNAFVFIAFTNRLKKYIRLLLRKTSRTLSN 368


>Z78537-3|CAD91626.1|  394|Caenorhabditis elegans Hypothetical
           protein C09F12.3 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 211 DVISPLSSDVNPFQKD*FLNRFESKINESILKTSIRLTN 327
           DV+S +S+ VN F    F NR +  I   + KTS  L+N
Sbjct: 330 DVLSMISASVNAFVFIAFTNRLKKYIRLLLRKTSRTLSN 368


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 444 KYG--PDSGHGISSGRAFCLFTNDYHIRD 364
           KYG  P  G+G+   R  C  T+  HIRD
Sbjct: 504 KYGSVPHGGYGLGLERFICWLTDTNHIRD 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,290
Number of Sequences: 27780
Number of extensions: 198077
Number of successful extensions: 421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)