Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L03
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   6.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   6.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   6.5  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   6.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +3

Query: 78  FCDFEPTLRERTNHVVTPHLSMIIL 152
           FC+++P +R  ++H +  +++M +L
Sbjct: 52  FCEYDPNVRPISSHQIANNVTMQLL 76


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 375 HIRDNKKDTLKIDTLLVCKS 316
           H  D+K++   +DT+LV  S
Sbjct: 24  HDEDSKEERKNVDTVLVLPS 43


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 72  SNYKYSG*NSCKIDKLFH 19
           +NYKY+  N+CK  KL++
Sbjct: 94  NNYKYNYNNNCK--KLYY 109


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 375 HIRDNKKDTLKIDTLLVCKS 316
           H  D+K++   +DT+LV  S
Sbjct: 24  HDEDSKEERKNVDTVLVLPS 43


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 375 HIRDNKKDTLKIDTLLVCKS 316
           H  D+K++   +DT+LV  S
Sbjct: 24  HDEDSKEERKNVDTVLVLPS 43


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 437 DRTADMVYRADE 402
           DRT  MVY ADE
Sbjct: 200 DRTNTMVYIADE 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,650
Number of Sequences: 438
Number of extensions: 2306
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)