Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L02
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 58 5e-10
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 56 2e-09
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 55 3e-09
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.25
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 2.3
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 4.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 24 5.4
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 5.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 24 7.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 24 7.1
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 24 7.1
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce... 23 9.4
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 23 9.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 23 9.4
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 23 9.4
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 57.6 bits (133), Expect = 5e-10
Identities = 31/72 (43%), Positives = 39/72 (54%)
Frame = +1
Query: 121 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 300
PES+ +++SA KKR+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 301 ARNRGNYCVPGE 336
AR GNY VP E
Sbjct: 76 ARAEGNYFVPHE 87
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 55.6 bits (128), Expect = 2e-09
Identities = 31/79 (39%), Positives = 41/79 (51%)
Frame = +1
Query: 100 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 279
SK+ PES+ ++++A KKR+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 280 EIRLARQARNRGNYCVPGE 336
+I L R+AR GNY VP E
Sbjct: 70 QIELGRKARAEGNYYVPDE 88
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 55.2 bits (127), Expect = 3e-09
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +1
Query: 187 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYCVPGE 336
+ ++ A K RKE FKRAE ++ YR +ER+ IRL R A+N+G+ VP E
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDE 86
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.25
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 205 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 318
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 196 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 309
R S K ++E +R +QYV E E+D+I + + ++
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 4.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 190 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 318
KR A ++ K+ +R ++ + E KE++ IRL + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +1
Query: 235 RAEQYVKEYRIKERDEIRLARQARNRGNYCVPGE 336
+A Q ++ + +RL N+ N+ +PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 204 SGTPLECDLKTASSECLPPFTVLQ 133
S PLE DL+ +ECL P ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 KKRKEIFKR-AEQYVKEYRIKERDEIRLARQARNR 312
+KR+EI ++ E+ V + K+ D IR + RN+
Sbjct: 1605 EKRREILQKDVEEQVAQSHQKQLDNIRKELEMRNK 1639
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 178 EDGELGVPPSFYGASRLIPEQLA 110
ED L +PP G +L PE++A
Sbjct: 178 EDELLELPPETSGRKKLTPEEMA 200
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 296 LANLISSRSLMRYSLTYCSALLKISFLFL 210
+ +L+S +SL T+C+++L +SF L
Sbjct: 261 VVHLLSQKSLPYSLTTFCASILVLSFFQL 289
>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 238 AEQYVKEYRIKERDEIRLARQ 300
A+ +KEY K RDE+ ++R+
Sbjct: 45 ADGLMKEYGFKNRDEVVVSRK 65
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 KEIFKRAEQYVKEYRIKERDEIRLARQARNR 312
KEIF+RA + ++ +K +I ++ NR
Sbjct: 883 KEIFERATSIMTKHNLKSSFDIEAIKEFVNR 913
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 161 SELAVFRSHSRGVPLPLRRGKKSLREPNNMSKNTASRSVMKSDWQ 295
SE RS G P P+R+G + + +S+ +S+ SD++
Sbjct: 20 SESPSSRSIGSGTPAPVRKGLSKFKN-SFLSRKNSSQIKSPSDYK 63
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 202 ASIKKRKEIFKRAEQYVKEYRI---KERDEIRLARQARN 309
A++ K E+F+ +QY + I KE I L R +N
Sbjct: 452 ANVLKSNELFRDTDQYTQRQMIEITKENAYIMLMRYLKN 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,420
Number of Sequences: 5004
Number of extensions: 23557
Number of successful extensions: 78
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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