Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L02
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 50 4e-07
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 49 8e-07
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 1.2
10_08_0412 - 17729765-17730283,17731256-17731726 29 1.2
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 27 5.0
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 26 6.6
08_02_0588 + 19036509-19039235 26 6.6
07_03_0109 + 13502604-13503059,13503729-13504682 26 8.7
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294... 26 8.7
01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706 26 8.7
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 50.4 bits (115), Expect = 4e-07
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 118 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 297
VPESV + + + SI+ RK IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 298 QARNRGNYCVPGE 336
+AR +G + V E
Sbjct: 70 EARMKGGFYVSPE 82
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 49.2 bits (112), Expect = 8e-07
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +1
Query: 106 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 285
K VPESV + L + +++ RK IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 286 RLARQARNRGNYCVPGE 336
+L R+AR +G + V E
Sbjct: 67 QLKREARMKGGFYVSPE 83
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 212 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 316
R+G KS+ P N K+ R +M S+ + L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142
>10_08_0412 - 17729765-17730283,17731256-17731726
Length = 329
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 220 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYCVP 330
+++ AE+YVK R+K+ E++ + AR N C P
Sbjct: 149 EDLLSIAEEYVKADRLKQH-EVKTTKTARYNENRCSP 184
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 93 RGQ*EVASCSGISLEAP*KEGGTPSSPSSDHTQEAFRFH*EEERN 227
R + E CS +S++AP E P + S+ + +E H E+ +
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNS 1347
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 60 GCGRE-KTCEG*RGQ*EVASCSGISLEAP*KEGG 158
GCGR+ KT G ASC G+S E +GG
Sbjct: 303 GCGRDVKTGSGLEFMAVDASCGGVSKEVVASDGG 336
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 60 GCGRE-KTCEG*RGQ*EVASCSGISLEAP*KEGG 158
GCGR+ KT G ASC G+S E +GG
Sbjct: 453 GCGRDVKTGSGLEFMAVDASCGGVSKEVVASDGG 486
>07_03_0109 + 13502604-13503059,13503729-13504682
Length = 469
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 181 SEDGELGVPPSFYGASRLIPEQLAT 107
S + E VPP +YG + L P AT
Sbjct: 317 SREEEAAVPPGYYGNAHLSPMVTAT 341
>03_01_0379 +
2946605-2946684,2946798-2946944,2947420-2947488,
2947608-2947773,2947889-2948117,2948206-2948645,
2949155-2949702,2949739-2949760
Length = 566
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 181 ITLKRRSASIKKRK-EIFKRAEQY-VKEYRIKERDEIRLARQARNRGNYCVPGE 336
+ K R+A I ++ +R+E V ++ R + L R + +RGN CV G+
Sbjct: 245 VVAKLRAARIPAEALDVIERSEMSDVVSSPLRFRSPLALVRGSISRGNVCVAGD 298
>01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706
Length = 265
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 3 TRAAWSFIPQHDGCDYRKEG 62
TR +++ P HDG +RK G
Sbjct: 42 TRTEYTYAPYHDGYQWRKYG 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,241,216
Number of Sequences: 37544
Number of extensions: 173189
Number of successful extensions: 486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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