Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L01
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    60   1e-10
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   4.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.2  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.2  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   6.2  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    24   8.2  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = +1

Query: 97  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 273
           MAPP YA + K  ND+  + + +G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVF--NVSGNQDAKGVISGKLET 58

Query: 274 KYAVKDYGLAFTEKWNTDNTLATDITIQDTIAAGLKVTL 390
            +  K  GL  ++ W T N L + + + +  A GL + +
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNV 97


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 232  SNQESGKVFGSLSSKYAVKDYGLAFTEKWNTDNT 333
            SNQ   K+  +L+ +   K +   +  K   DNT
Sbjct: 1160 SNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 217 TSGITSNQESGKVFGSLSSKYAVKDYGLAFTEKWNTDNTLAT 342
           T+G  +   +G V G LS    +    + F EK++ +  LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 49  ISGKSPTTIPHAPPSC 2
           ++  SPT IP  PPSC
Sbjct: 355 VARSSPTDIPLPPPSC 370


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 112 YADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLS 270
           YA  G   N   S  YH G    D+  ++E+ +  T+G  + ++SG   GS S
Sbjct: 317 YAMFGSCNNPQCSL-YH-GAVSADVPEQTEAPISKTAGSINPEDSGSEIGSNS 367


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 265 LSSKYAVKDYGLAFTEKWNTDNTLATDITIQDTI 366
           +++  AVKDY +     +NT N++   + I D I
Sbjct: 7   INAAAAVKDYSIKPRLSYNTVNSITGPLVILDNI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,950
Number of Sequences: 5004
Number of extensions: 32496
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)