Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L01
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 49 1e-06
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 31 0.28
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 31 0.37
10_08_1050 - 22559518-22559613,22559736-22559846,22559966-225600... 29 1.5
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 28 2.6
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 28 2.6
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553... 27 8.0
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 27 8.0
01_06_0328 + 28507942-28508610,28509669-28510826 27 8.0
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 49.2 bits (112), Expect = 1e-06
Identities = 34/98 (34%), Positives = 49/98 (50%)
Frame = +1
Query: 97 MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 276
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 277 YAVKDYGLAFTEKWNTDNTLATDITIQDTIAAGLKVTL 390
+K+ L K N+++ L T +T+ + GLK L
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSIL 93
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 31.5 bits (68), Expect = 0.28
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 106 PYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAV 285
P Y G + D+ SK +HL + + + G++F SG+ S + V L+ + A+
Sbjct: 261 PQYVH-GTQLPDLESKFFHLDLMHPSVY---KVGLQFLSGVISGGNACCVAMLLAFREAI 316
Query: 286 KDYGLAFTEKWNTDNT 333
KDY T+ N D T
Sbjct: 317 KDYSTPSTKTLNRDLT 332
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 31.1 bits (67), Expect = 0.37
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -2
Query: 227 IPLVNSTPDSLLVFKSSLNTPR**PLLKTSLAFFPRSA*YGGAMPEVY 84
+P + PDSLLV +SL R PLL++ L+ P SA G P ++
Sbjct: 115 LPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLF 162
>10_08_1050 -
22559518-22559613,22559736-22559846,22559966-22560034,
22560172-22560327,22560416-22560458,22560566-22560661,
22561136-22561249,22561390-22561574
Length = 289
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 112 YADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKD 291
YAD ANDV+ +G FK +T S + I + V +L+ Y KD
Sbjct: 133 YADTSGAANDVYEFVKKIGKFKETKRTDGVSTSDLIMRILKDYNQ-YVMRNLARGYTRKD 191
Query: 292 YGLAFTEK 315
G+++ ++
Sbjct: 192 LGVSYVKE 199
>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 317 GIQTTLW-RLILPFRIRLQLALRLHLKGTFAP 409
G+ +++W RL+ +L+LA R +LK TF P
Sbjct: 1073 GVPSSIWHRLVAGLNAQLRLARRGNLKATFLP 1104
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 286 KDYGLAFTEKWNTDNTLATDITIQDT-IAAGLKVTLER 396
++YG AF WNT N+ QD +++G T R
Sbjct: 264 REYGSAFNNSWNTSNSTPVCFDKQDPFMSSGYPTTYNR 301
>02_01_0743 -
5530184-5531078,5531160-5531405,5531815-5532450,
5534499-5534607,5536157-5536321,5536446-5536543,
5536648-5536898
Length = 799
Score = 26.6 bits (56), Expect = 8.0
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = +1
Query: 187 KTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLAFTEKWNTDNTLATDITIQDTI 366
+T++ES + F + + GK+ L + G A E LA D+T + I
Sbjct: 415 RTQNESQLCFLGSLDPEKVKGKIVVCLRGVNPRVEKGEAVLEAGGAGMVLANDVTTGNEI 474
Query: 367 AAGLKVTLERHLCTTD 414
A V H+ +D
Sbjct: 475 IADAHVLPATHIKFSD 490
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 196 SESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLAFTE 312
S +G T G + + K FG++SSK V YG+ E
Sbjct: 458 SIAGARGTIGYIAPEVYSKQFGAISSKSDVYSYGMMILE 496
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 196 SESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLAFTE 312
S +G T G + + K FG++SSK V YG+ E
Sbjct: 479 SIAGARGTIGYIAPEVYSKQFGAISSKSDVYSYGMMILE 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,246
Number of Sequences: 37544
Number of extensions: 200429
Number of successful extensions: 402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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