Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L01
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...   103   4e-23
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    32   0.19 
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    32   0.19 
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score =  103 bits (248), Expect = 4e-23
 Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +1

Query: 97  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESG--VEFTSGITSNQESGKVFGSLS 270
           MAPP +ADLGK A D+F+KGY+ G  K+D  T++     VEF S  + N  SGK+ G+L 
Sbjct: 1   MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNLD 60

Query: 271 SKYAVKDYGLAFTEKWNTDNTLATDITIQDTIAAGLKVTLE 393
            KY +  YG+  TEKWNT+N L T I + +    GLKVTL+
Sbjct: 61  VKYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLD 101


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 190  TKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLAFTEKWNTDNTLATD 345
            T+S  G         + +S    G+ S KY V  +G    EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 190  TKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLAFTEKWNTDNTLATD 345
            T+S  G         + +S    G+ S KY V  +G    EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 253 VFGSLSSKYAVKDYGLAFTEKWNTDNTLATDI 348
           VFG LSS     DYG+    K+ TD      I
Sbjct: 252 VFGELSSSKKTIDYGITKQWKYRTDGRFELSI 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,454,287
Number of Sequences: 27780
Number of extensions: 176346
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)