Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L01
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   5.6  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   9.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 172 FKLDLKTKSESGVEFTSGITSNQ 240
           F+LDL+ + E+G + +S IT+ +
Sbjct: 174 FQLDLQLQDEAGGDISSFITNGE 196


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 77  ELNKLQAWLLHTM 115
           EL K+  W LH M
Sbjct: 272 ELTKIDKWFLHKM 284


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 87  LFNS*IELFNNCEFQANRRQLYLTHHP 7
           L N   +LF  C    N R + + H P
Sbjct: 30  LLNGKXDLFARCMGGINSRNMDIEHDP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,399
Number of Sequences: 438
Number of extensions: 2119
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)