Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K24
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    45   4e-06
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    32   0.041
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    31   0.054
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   1.2  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   2.7  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   4.7  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   6.2  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    24   8.2  

>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
 Frame = +2

Query: 98  PKPVCVQCNANDSLLWRSSDNGQ-ICNDCHLANTVTKDSKLDAVKIESEDIKEENGKVEG 274
           P P C  C    + LWR S +GQ +CN C L   +  +  +  + ++++ IK+ N  V  
Sbjct: 631 PTPTCTNCQTRTTPLWRRSPDGQPLCNACGLFMKI--NGVVRPLSLKTDVIKKRNRGVGT 688

Query: 275 ESTPAKATGK--GTRKST 322
            +TP ++ G+   TRKS+
Sbjct: 689 SATPKQSGGRKGSTRKSS 706


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 31.9 bits (69), Expect = 0.041
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 110 CVQCNANDSLLWRSS-DNGQICNDCHLANTVTKDSKLDAVKIESEDIKEENGKVEGESTP 286
           C  C+   + LWR   DN  +CN C L     K ++     ++SED+K+ +  ++     
Sbjct: 12  CSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHAR----PVKSEDLKDISPLIQQVCKN 67

Query: 287 AKATGKG 307
               G G
Sbjct: 68  GTCAGDG 74


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 31.5 bits (68), Expect = 0.054
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 107 VCVQCNANDSLLWRSSDNGQ-ICNDCHL 187
           VC  C++  + LWR   +GQ +CN C L
Sbjct: 418 VCANCSSTKTSLWRKDRHGQTVCNACGL 445



 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 107 VCVQCNANDSLLW-RSSDN-GQICNDCHLAN 193
           VC  C   ++ LW R+SD    +CN C L N
Sbjct: 364 VCFNCGVTETPLWRRTSDKLNFLCNACGLYN 394


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 270 KVNLHLRRPQVKGLERVRGRLGINQKPPHRRSPNQRHLAVEAAGVYS 410
           K++L L   ++   E  R  + +N    HRRS +Q+++  +   VYS
Sbjct: 424 KLHLRLANLRIAYCEDCREFISLNAALDHRRSHHQQNITGDLVHVYS 470


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/70 (21%), Positives = 30/70 (42%)
 Frame = +2

Query: 122 NANDSLLWRSSDNGQICNDCHLANTVTKDSKLDAVKIESEDIKEENGKVEGESTPAKATG 301
           N N+ L+  ++ N ++           ++S ++  +     I +  G +E        +G
Sbjct: 187 NDNNGLI-ETNHNSKLEESSEHEEEEDEESNIERTEDSDHQIPQRGGTLEAPRKGGPRSG 245

Query: 302 KGTRKSTRAT 331
            G+RK  RAT
Sbjct: 246 VGSRKRKRAT 255


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 187 SEHSYKRQQIGRCEDRERGYQGRKW 261
           S+H Y+ ++I +CE     Y+ R+W
Sbjct: 39  SQHIYQEEKISKCEG--LSYRAREW 61


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 215 LDAVKIESEDIKEENGKVEGESTPAKA 295
           ++A K+E +  K +N  +   S+PAKA
Sbjct: 1   MEAPKMELKSYKRKNASLSPSSSPAKA 27


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 197 VTKD-SKLDAVKIESEDIKEENGKVEGESTPAKATGKGTRKSTR 325
           V KD SK +A   +S   KE+  K    S P ++TG+ T+K+ +
Sbjct: 204 VPKDVSKKEAKTTKS---KEKATKKTSSSVPKQSTGENTKKAVK 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,310
Number of Sequences: 5004
Number of extensions: 32714
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)