Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K24
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 32 0.21
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 31 0.37
07_03_1730 - 29099262-29099807 29 2.0
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 29 2.0
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 28 2.6
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 28 2.6
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905... 28 2.6
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107 28 2.6
02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496 28 2.6
03_06_0199 + 32310272-32311432 28 3.5
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 3.5
01_05_0096 + 18073573-18073839,18073890-18074294 28 3.5
07_01_1030 + 8915329-8915484 27 4.6
03_05_1049 - 29956379-29956400,29957103-29957188,29957269-299574... 27 4.6
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 27 8.0
11_04_0142 + 14027726-14029081 27 8.0
01_01_0451 + 3355782-3355823,3356410-3357222 27 8.0
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 31.9 bits (69), Expect = 0.21
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +2
Query: 197 VTKDSKLDAVKIESEDIKEENGKVEGESTPAK----ATGKGTRK-STRATR 334
+TKD+K K ESED +E+ + G+ P K +T GT K S +AT+
Sbjct: 309 LTKDTKKGQSKDESEDSSDESSEESGDEPPQKKIKDSTTSGTTKPSPKATK 359
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 31.1 bits (67), Expect = 0.37
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 110 CVQCNANDSLLWRSSDNG--QICNDCHLANTVTKDSKLDAVKIESEDIKEENGKV 268
CV+C A + +WRS G +CN C + K + D ++ K+E+G+V
Sbjct: 670 CVECRATTTPMWRSGPTGPRSLCNACGI--RYRKKRRQDLGLDLNQPQKQEHGEV 722
>07_03_1730 - 29099262-29099807
Length = 181
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 382 RCRWFGDRRCGGFWFIPSRPRTLSSPFTCGLRRCR 278
RCR R C W++ +RP P TC L RCR
Sbjct: 114 RCRHLFHRGCLDRWWLSARP-----PATCPLCRCR 143
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 152 SDNGQICNDCHLANTVTKDSKLDAVKIESEDIKEEN 259
S G D H + KDS+LD VK + ED+ E++
Sbjct: 1376 SPKGSELPDWHRMDKEAKDSRLDDVKEDLEDLDEDH 1411
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 361 RRCGG-FWFIPSRPRTLSSPFTCGLR 287
RR GG F+P R R SSPF CGL+
Sbjct: 3 RRPGGESLFLPLRCRLPSSPFDCGLQ 28
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +2
Query: 107 VCVQCNANDSLLWRSSDNG--QICNDC 181
VC CN + LWRS G +CN C
Sbjct: 187 VCSDCNTTKTPLWRSGPCGPKSLCNAC 213
>05_06_0251 +
26687833-26688120,26689288-26689365,26690499-26690580,
26691155-26691195,26691973-26692143,26693586-26693813,
26694237-26694638
Length = 429
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 149 SSDNGQICNDCHLANTVTKDSKLDAVKIESEDIKEENGKVEGESTPAKATGKGT 310
+SD+ Q CN CHL D +++KI + ++ + K G TP T T
Sbjct: 132 TSDSCQNCNACHLQICNYGDVSTESIKIHA--TQDRSAKALGGCTPKINTAATT 183
>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
Length = 151
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 110 CVQCNANDSLLWRSSDNG--QICNDCHLANTVTKDSKLDAVKIESED 244
CV+C A + +WR G +CN C + + +L K + ++
Sbjct: 27 CVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLDKKQQQE 73
>02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496
Length = 353
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +2
Query: 107 VCVQCNANDSLLWRSSDNG--QICNDC 181
VC CN + LWRS G +CN C
Sbjct: 177 VCSDCNTTKTPLWRSGPCGPKSLCNAC 203
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.9 bits (59), Expect = 3.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 249 RKKMEKLKVNLHLRRPQVKGLERVRGRLGI-NQKPPHRRSPNQRHLAVEAAGV 404
R +L+ L LRRP+ + L RVRG L + + + RR P +R GV
Sbjct: 130 RPARRRLRQGL-LRRPRQRRLLRVRGELRVRSHQAGRRRWPLRRRRRARVGGV 181
>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +2
Query: 149 SSDNGQICNDCHLANTVTKDSKLDAV---KIESE--DIKEENGKVEGESTPA 289
+++NG N H AN V + DAV K+E + D +E K++G++ A
Sbjct: 1475 ATENGNAGNGMHKANDVMAEENGDAVMRNKMEEDTIDTMQEENKMDGKNPEA 1526
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 27.9 bits (59), Expect = 3.5
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 89 NIMPKPVCVQ-CNANDSLLWRSSDNGQICNDCHLAN-TVTKDSKLDAVKIESEDIKEENG 262
+I+P + V+ A++ + W S + N+ A T T K+D K+E+E KEE
Sbjct: 98 SILPSKIEVRLAKADEQVTWTSLEYTSKANNKLAATATTTTRKKVDWDKLEAEVKKEEEE 157
Query: 263 KVEGESTP 286
+ +TP
Sbjct: 158 EEVDTATP 165
>07_01_1030 + 8915329-8915484
Length = 51
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 248 KEENGKVEGESTPAKATGKGT 310
KEE GKVE ES+P + GT
Sbjct: 7 KEEEGKVESESSPRQCGTTGT 27
>03_05_1049 -
29956379-29956400,29957103-29957188,29957269-29957413,
29958518-29958813,29959242-29959253
Length = 186
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 136 RVICVALHANWFRHYVEKLHLIKFPNI 56
+V+CV + WF H ++ L + PN+
Sbjct: 98 QVVCVRYNRGWFYHKEVRVWLTRIPNV 124
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 101 KPV-CVQCNANDSLLWRSSDNGQ----ICNDCHLANTVTKDSKLDAVKIESEDIKE 253
KP+ C +CN + L+ + N + +CN ++ +KDS D K+ E K+
Sbjct: 85 KPILCAKCNPYSAELFNAGPNIRTIPFLCNSTSSSSAQSKDSTQDYCKLVWETCKD 140
>11_04_0142 + 14027726-14029081
Length = 451
Score = 26.6 bits (56), Expect = 8.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 155 DNGQICNDCHLANTVTKDSK 214
+ G+IC DCH++ + T D +
Sbjct: 29 EEGEICYDCHVSGSETDDDE 48
>01_01_0451 + 3355782-3355823,3356410-3357222
Length = 284
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 248 KEENGKVEGESTPAKATGKGTRKSTRA 328
KE+N K++ E++ KA KG++K A
Sbjct: 48 KEQNQKLQEENSSRKAPAKGSKKGCMA 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,369
Number of Sequences: 37544
Number of extensions: 209567
Number of successful extensions: 570
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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