Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K24
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   4.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 83  FLNIMPKPVCVQCNANDSLLWRSSDNGQICNDCHL 187
           FLN + K   +    N  L ++ SDN    N+ H+
Sbjct: 425 FLNQLKKSSVLVHTKNGRLKYQISDNDISTNETHI 459


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = +2

Query: 89  NIMPKPVCVQ 118
           N++PKP+C++
Sbjct: 56  NVVPKPLCIK 65


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = +2

Query: 89  NIMPKPVCVQ 118
           N++PKP+C++
Sbjct: 56  NVVPKPLCIK 65


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 101 KPVCVQCNANDSLLWRSSDNGQICNDCHLANTVTKD 208
           KP+ +  N N+  L   SD+     +  LAN V  D
Sbjct: 804 KPIGILWNMNNKRLDPKSDSRYTIREEILANGVLSD 839


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 QLQKTANWTL*R*RARISRKKMEKLKVNLHLRRPQVKGLER 317
           +L++   W + + R R   +  +K+ +   LRR + K L +
Sbjct: 35  RLRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSK 75


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 233 ESEDIKEENGKVEGE 277
           ES+D+ E +G+V G+
Sbjct: 55  ESDDLHESDGRVGGK 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,140
Number of Sequences: 438
Number of extensions: 2468
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)