Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K22
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    30   0.074
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    27   0.52 
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    26   1.2  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    25   1.6  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   1.6  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   1.6  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   1.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   8.5  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.9 bits (64), Expect = 0.074
 Identities = 14/57 (24%), Positives = 20/57 (35%)
 Frame = +2

Query: 5   EVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 175
           ++++L+ NIGS                                    D+DMGFGLFD
Sbjct: 54  DLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 0.52
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = +2

Query: 5   EVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 175
           ++++L+ NIGSG                                   D+DMGFGLFD
Sbjct: 54  DLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEES-DEDMGFGLFD 109


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/57 (24%), Positives = 20/57 (35%)
 Frame = +2

Query: 5   EVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 175
           ++++L+ NIGS                                    D+DMGFGLFD
Sbjct: 54  DLKELLLNIGSA-GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 DDDMGFGLFD 175
           D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 DDDMGFGLFD 175
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 DDDMGFGLFD 175
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 DDDMGFGLFD 175
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 237  LISNALQKLKWNILALK*SF 178
            L+SN   K KW ++A K +F
Sbjct: 1028 LLSNDFSKKKWKVVASKNAF 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,269
Number of Sequences: 5004
Number of extensions: 4617
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)