Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K22
         (285 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    32   0.058
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    32   0.058
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    27   2.2  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    27   2.2  
AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormo...    25   6.6  

>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 32.3 bits (70), Expect = 0.058
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +2

Query: 5   EVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 175
           +V++LIT++ SG                                   DDDMGFGLFD
Sbjct: 55  DVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 32.3 bits (70), Expect = 0.058
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +2

Query: 5   EVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 175
           +V++LIT++ SG                                   DDDMGFGLFD
Sbjct: 55  DVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 DDDMGFGLFD 175
           DDDMGFGLFD
Sbjct: 303 DDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 DDDMGFGLFD 175
           DDDMGFGLFD
Sbjct: 98  DDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 DDDMGFGLFD 175
           DDDMGFGLFD
Sbjct: 101 DDDMGFGLFD 110


>AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 118 protein.
          Length = 231

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 50  RHQLPTRCWLLNHEP 6
           RHQLP R WL N  P
Sbjct: 159 RHQLPNRIWLENTLP 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,831
Number of Sequences: 27780
Number of extensions: 24535
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)