Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K21
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0181 - 18986708-18986885,18987008-18987081,18987398-18987625     31   0.30 
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764...    31   0.52 
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    30   0.91 
10_08_0920 - 21580057-21580926                                         29   2.1  
02_01_0035 - 220036-221419,222050-222801                               28   3.7  
01_01_1081 + 8504035-8504461,8504546-8504685                           27   8.5  

>01_05_0181 - 18986708-18986885,18987008-18987081,18987398-18987625
          Length = 159

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 233 VRSNQRSISASKAGSCSDFCNASIASGSSPNTVFG-GPFKPQILVIF 96
           +R  QR ++  + G+C DF N  I   S P  + G GP   QI V F
Sbjct: 67  LRRRQRRVA--RLGACGDFVNLKICRPSLPEVLIGVGPLSYQIKVDF 111


>05_05_0208 +
           23275931-23275996,23276084-23276196,23276279-23276459,
           23276590-23276674,23276974-23277104,23277194-23277432,
           23277512-23277748,23277838-23277992,23278039-23278271,
           23278359-23278521,23278613-23278818,23278960-23279019,
           23279106-23279198,23279406-23279569,23280070-23280138,
           23280241-23280382,23280490-23280546
          Length = 797

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 289 NKMIKEDIEAALKETHETIRHHRLQDAENRREIYRSIFDPAVHDA 423
           ++++K D+EAAL+  +  I H  L + E R +    +   A HDA
Sbjct: 653 HEVLKTDVEAALQVLNFAIYHKELTEMEEREQREMEMKQQADHDA 697


>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 399 NGSINFSTILCVLKSMMANCFVSFFECCFDVLL 301
           +G I+  TI  ++ +  A   ++F ECC DVLL
Sbjct: 524 HGKIDIGTIKILVSAGPAFFILNFIECCLDVLL 556


>10_08_0920 - 21580057-21580926
          Length = 289

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 227 SNQRSISASKAGSCSDFCNASIASGSSPNTVFGGPFKPQIL 105
           S+  S SA+   SCS     + +S + PN V GG  K +++
Sbjct: 11  SSSSSSSAASTSSCSSAVTDAWSSPARPNAVAGGKRKKEVV 51


>02_01_0035 - 220036-221419,222050-222801
          Length = 711

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 24  ASGFQSLQFRLLENKLGLKQALRVKYNQNLRFERAAEDRVWRR 152
           AS F+ L  RL+E++  L +       +  R ERAA D  WRR
Sbjct: 407 ASFFERLVQRLMEHQESLHRQFLDTMERRER-ERAARDEAWRR 448


>01_01_1081 + 8504035-8504461,8504546-8504685
          Length = 188

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 145 GDDPEAMDALQKSEQEPALLALIERWLERTPG 240
           GD+ +  D L  S  E      +ERWL R  G
Sbjct: 72  GDNGDGSDVLGSSGSEEMTTTEMERWLSRVDG 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,665,004
Number of Sequences: 37544
Number of extensions: 220140
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)