Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K21
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical p...    58   4e-09
U20861-14|AAN63440.1|  245|Caenorhabditis elegans Hypothetical p...    57   5e-09
Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical pr...    33   0.066
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    28   3.3  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    28   3.3  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    28   3.3  
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   4.3  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    27   4.3  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   4.3  
AF016448-9|AAB65950.1|   95|Caenorhabditis elegans Fungus-induce...    27   5.7  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    27   7.5  
AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical ...    26   10.0 

>U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical
           protein C28H8.11a protein.
          Length = 403

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
 Frame = +1

Query: 133 KTVFGDDPEAMDALQKSEQEPALLALIERWLERTPGL--NTHGFNFWGKFQTAVNKMIKE 306
           K VF D    +  L  +E+E +LL LIE WLERTPGL   +    FW K++ +VNK + +
Sbjct: 177 KNVFNDTD--LKTLNVTEEEKSLLTLIESWLERTPGLKSTSEDEGFWIKYEKSVNKYLAD 234

Query: 307 -DIEAALKETHETIRHHRLQDAENRREIYRSIFDPAVHD 420
              +AA     E I      +     + ++SI DP  H+
Sbjct: 235 LAKQAADPSNTEEIAKQLTAEYHKTADAFQSILDPRQHE 273



 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = +3

Query: 6   RHYLRPASGFQSLQFRLLENKLGLKQALRVKYN 104
           R YL PASGFQSLQFR+LENKLG++Q  R+KYN
Sbjct: 140 RKYLTPASGFQSLQFRVLENKLGVRQERRIKYN 172


>U20861-14|AAN63440.1|  245|Caenorhabditis elegans Hypothetical
           protein C28H8.11b protein.
          Length = 245

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = +3

Query: 6   RHYLRPASGFQSLQFRLLENKLGLKQALRVKYN 104
           R YL PASGFQSLQFR+LENKLG++Q  R+KYN
Sbjct: 140 RKYLTPASGFQSLQFRVLENKLGVRQERRIKYN 172



 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +1

Query: 133 KTVFGDDPEAMDALQKSEQEPALLALIERWLERTPGL--NTHGFNFWGKFQTAVNKMIKE 306
           K VF D    +  L  +E+E +LL LIE WLERTPGL   +    FW K++ +VNK + +
Sbjct: 177 KNVFNDTD--LKTLNVTEEEKSLLTLIESWLERTPGLKSTSEDEGFWIKYEKSVNKYLAD 234


>Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical
           protein F08A8.6 protein.
          Length = 362

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 304 EDIEAALKETHETIRHHRLQDAENRREIYRSIFDPAVHDALR 429
           E  E  LKE H   +H R +  ENR E+ R  ++ A+ DA R
Sbjct: 302 EHYENRLKEMHGEFQHVRREADENREEVQRLRYELALRDASR 343


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 366 VLKSMMANCFVSFFECCFDVLLYHFV 289
           V+   + NC +S F CC + +L+HF+
Sbjct: 119 VVMQFIYNCTMSVFRCCRNRMLHHFL 144


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 316 AALKETHETIRHHRLQDAENRREIYR 393
           AA K  HE  +H +LQD E RR   R
Sbjct: 58  AAAKRRHEEEQHAKLQDYEERRRTER 83


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 316 AALKETHETIRHHRLQDAENRREIYR 393
           AA K  HE  +H +LQD E RR   R
Sbjct: 892 AAAKRRHEEEQHAKLQDYEERRRTER 917


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 316 AALKETHETIRHHRLQDAENRREIYR 393
           AA K  HE  +H +LQD E RR   R
Sbjct: 58  AAAKRRHEEEQHAKLQDYEERRRTER 83


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 411 GWVKNGSINFSTILCVLKSMM 349
           GWV +GS+NF  +L    S+M
Sbjct: 343 GWVHDGSLNFGDMLTTFSSVM 363


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 157 EAMDALQKSEQEPALLALIERWLERTPGLNTHGFNF--WGKFQTAVNKMIKEDIE 315
           E +D   +S    +L   I   LER   ++THG N+  W   ++ V +MI E ++
Sbjct: 796 EWLDCEPESGARTSLAFTINLSLERYLAVSTHGINYMKWIFIKSTVQQMIDELVD 850


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 157 EAMDALQKSEQEPALLALIERWLERTPGLNTHGFNF--WGKFQTAVNKMIKEDIE 315
           E +D   +S    +L   I   LER   ++THG N+  W   ++ V +MI E ++
Sbjct: 796 EWLDCEPESGARTSLAFTINLSLERYLAVSTHGINYMKWIFIKSTVQQMIDELVD 850


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 411 GWVKNGSINFSTILCVLKSMM 349
           GWV +GS+NF  +L    S+M
Sbjct: 343 GWVHDGSLNFGDMLTTFSSVM 363


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 157 EAMDALQKSEQEPALLALIERWLERTPGLNTHGFNF--WGKFQTAVNKMIKEDIE 315
           E +D   +S    +L   I   LER   ++THG N+  W   ++ V +MI E ++
Sbjct: 796 EWLDCEPESGARTSLAFTINLSLERYLAVSTHGINYMKWIFIKSTVQQMIDELVD 850


>AF016448-9|AAB65950.1|   95|Caenorhabditis elegans Fungus-induced
           protein protein 4 protein.
          Length = 95

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 333 SFFECCFDVLLYHFVDGSLELAPKVEP 253
           SFF CC+DV L+  +  +L L+ K  P
Sbjct: 9   SFFVCCYDVYLHFNIHFTLFLSHKKLP 35


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 292  KMIKEDIEAALKETHETIRHHRLQDAENRREIYRSIFD 405
            + +KED+E +L    ETI   +L D +  ++ YR+I +
Sbjct: 1411 RRLKEDVEKSLGPKEETIIEVQLSDMQ--KKFYRAILE 1446


>AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical
           protein F13A2.3 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 19/74 (25%), Positives = 28/74 (37%)
 Frame = +1

Query: 163 MDALQKSEQEPALLALIERWLERTPGLNTHGFNFWGKFQTAVNKMIKEDIEAALKETHET 342
           +D L++    P    L + W +            W + Q      IK+  EA   + H  
Sbjct: 163 LDGLEQGIPNP----LYQNWKQTVQSTGNFPQLSWNQ-QAPEAMPIKQKSEANGTKPHNN 217

Query: 343 IRHHRLQDAENRRE 384
             HHR  D+  RRE
Sbjct: 218 TTHHRQFDSSRRRE 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,789
Number of Sequences: 27780
Number of extensions: 190684
Number of successful extensions: 576
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)