Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K20
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    38   3e-04
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    28   0.37 
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   1.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   1.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   2.0  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   2.0  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   3.5  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   3.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.6  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   6.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   6.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   8.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    24   8.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    24   8.0  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    24   8.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    24   8.0  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 38.3 bits (85), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = +1

Query: 193 KISCWNVDGIR------AWLNKGGLDYVKYE-KPDILCLQEIKCSKDKLPDELVNLPGYH 351
           +I  WNV+GI+       W  K     +  E + D++C+QE+K  KD  P +   + G+ 
Sbjct: 2   RILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGFD 61

Query: 352 AY 357
           +Y
Sbjct: 62  SY 63


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 34  EPTTKRRRKLPEEKAL-SEDANK---KVPLKNKATTSYEVIDFTNTSKTAQGKDWNFK 195
           E  +K++R +P    L +E A K   K PL+ +   SY+ ++F+  +K A+     F+
Sbjct: 367 ERASKKKRDIPHPVGLYAEQAVKIKTKEPLEGEELRSYQELEFSKRNKDAEDTALEFR 424


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 46  KRRRKLPEEKALSEDANKKVPLKNKATTS 132
           K +++ PE+K   E ++KKV  KNK   S
Sbjct: 29  KNKKRKPEKKDDKEKSSKKVQKKNKVIES 57


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 62  NLRRRFVVGSSAFWCSSSPR 3
           NLR+ FV+G S  W S+S R
Sbjct: 791 NLRKGFVLGISRIWVSASRR 810


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 40  TTKRRRKLPEEKALSEDANKKVPLKNKATTSYEV 141
           T K  + + +EKA+  D +KK+ +  +A  SY++
Sbjct: 510 TMKDGKAVVDEKAVLSDRSKKIKVDKEALESYKL 543


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 16  EHQNADEPTTKRRRKLPEEKALSEDANKKVP-LKNK-ATTSYEVIDFTNTSKTA 171
           E Q  DE    ++RKL EE+   E+   ++  L NK ++ + E++  T T   A
Sbjct: 43  EKQQKDEQRELKKRKLEEERLKYEEKKLRISRLANKESSRNEELLTETTTPSPA 96


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  NADEPTTKRRRKLPEEKALSEDANKKVPLKNKATTSYEV 141
           NADE  TK+ ++  +E  LS +     P+++K     +V
Sbjct: 64  NADEKDTKKAKRSFDESNLSTNEEADKPVESKFVKKLKV 102


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 28  ADEPTTKRRRKLPEEKALSEDANKKVPLKNKATTSYEVIDF-TNTSKTAQ 174
           A EP T     L    +LS  AN+KVP  N   +  E+ D  ++TS+T Q
Sbjct: 252 ASEPPT-----LSRGNSLSLLANRKVPSTNVKKSQAELYDLGSSTSRTQQ 296


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 52  RRKLPEEKALSEDANKKVPLKNKATTSYEVIDFTNTSKT 168
           R KLP    LS+    KVP KN+++T   +   T++SKT
Sbjct: 210 RVKLPTS-ILSKSPPLKVPNKNRSSTFSPLRTPTSSSKT 247


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 4   RGEDEHQNADEPTTKRRRKLPEEKALSEDANKKVPLKNKATTSYEVI---DFTNTSKTAQ 174
           RGE   +++DE   +R  K  ++K   E  +    +KN  +++  ++   +F + +K +Q
Sbjct: 155 RGESSEESSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSSNNWIVVSNEFDHLNKVSQ 214


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 19  HQNADEPTTKRRRKLPEEKALSEDANKKVPLKNKATTSYEVIDFTNTSKTAQG 177
           ++ A E      R + +EKA++EDA K     N   T      F ++    +G
Sbjct: 296 NEAAKETDVDSSRFISDEKAVTEDAMKTEHASNAPLTDERHFQFHSSEGDIEG 348


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 254 TLNTKNRIYFVYKKLNAP 307
           T+N     +F YKKLN P
Sbjct: 529 TINATLYTFFTYKKLNTP 546


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 267 FVFNVIQTALIQPRSDTVDVPTGYFKVPI 181
           FV NVI T +  P ++   +   +F +PI
Sbjct: 265 FVKNVIATVVTVPVAELHHIRNAFFNIPI 293


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 347 YPGKFTNSSGNLSLEHLISCKQ 282
           Y   FTN +  L+LEHL S +Q
Sbjct: 243 YARLFTNHNKKLALEHLKSFRQ 264


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 16  EHQNADEPTTKRRRKLPEEKALSEDA 93
           E +  DEPT+  +RK   ++ L  DA
Sbjct: 477 EQEETDEPTSLSKRKRSIDEILPNDA 502


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 200 DILKFQSLPCAVLDVLVKSMTS*LVVALFFSGTFLFASSDNAFSSGNL 57
           D+L     P   +D  V ++ S +  + F S  +LF +     SSGNL
Sbjct: 583 DLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,290
Number of Sequences: 5004
Number of extensions: 26004
Number of successful extensions: 86
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)