Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K20
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   0.82 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   1.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   7.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 7   GEDEHQ-NADEPTTKRRRKLPEEKALSEDANKKVPLKNKATTSYEVIDFTN 156
           G++ H  N +  TTK + K P+E       ++K  L+ + + S  V D  N
Sbjct: 128 GKEVHSGNIEAVTTKEKAKFPQEFFPECKWSRKGFLRTRWSISGTVFDLIN 178


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 245 VWITLNTKNRIYFVYKKLNAPKINYRM 325
           VW+ L+ K  +Y +Y  +++ KINYR+
Sbjct: 497 VWV-LSNKLAMY-LYGSIDSSKINYRI 521


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 202 CWNVDGIRAWLNKGGLDYVKYEKPDILCLQEIKC 303
           C++ DGI+    + G+  +K  +P + C + IKC
Sbjct: 109 CYDADGIKLMNEENGVMEIKIREP-VEC-KCIKC 140


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 202 CWNVDGIRAWLNKGGLDYVKYEKPDILCLQEIKC 303
           C++ DGI+    + G+  +K  +P + C + IKC
Sbjct: 109 CYDADGIKLMNEENGVMEIKIREP-VEC-KCIKC 140


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 283 CLQEIKCSKDKLPDELVNLPGYHA 354
           CL+++ CS  KL   L  + G  A
Sbjct: 76  CLEDLDCSLRKLNSRLFVIRGQPA 99


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 61  TCVDVS*LARRRSGVHL 11
           TC+ +    RRR G HL
Sbjct: 201 TCIQIVFNLRRRLGYHL 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,852
Number of Sequences: 438
Number of extensions: 1581
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)