Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K19
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   2.4  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    24   5.5  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   7.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    23   9.6  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 205 RMVKITGQNGDTFGLVSKSKILLLGNCFRNLS 110
           R+ +++  N + F  VSK ++  L NCF + S
Sbjct: 660 RLEQLSEFNSEKFKTVSKREVEALVNCFNHTS 691


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 175 DTFGLVSKSKILLLGNCFRNLSNIY 101
           D FG  + SK LLL +   NL N Y
Sbjct: 434 DAFGRDAASKPLLLNDYEENLKNTY 458


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 49  FFSVRIILYYKDPTFCLNKYYSDFENSCPVIIFL 150
           FF V +    +D   C  KY +DF+  C +  +L
Sbjct: 414 FFVVLVHRVSRDIKKCKAKYGADFDEYCRICPYL 447


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 67  ILYYKDPTFCLNKYYSD 117
           +LYY   TF L+ +Y D
Sbjct: 138 VLYYDQSTFSLSLFYPD 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,312
Number of Sequences: 5004
Number of extensions: 26374
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)