Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K19
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 28 1.6
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 26 4.7
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 26 4.7
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673... 26 6.3
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224... 26 6.3
10_01_0208 - 2228234-2228254,2228494-2228709,2228796-2228946,222... 26 6.3
01_06_0119 + 26616087-26616278,26617190-26617669 26 6.3
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 25 8.3
04_04_1665 - 35164114-35164188,35164361-35164415,35164535-351648... 25 8.3
>02_02_0009 +
6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 175 DTFGLVSKSKILLLGNCFRNLSNIY*GKMWGLCNT-ILYAQKRIIKN 38
DTFG ++ +L+LG + NI +WG ++ ++YAQ I N
Sbjct: 669 DTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVN 715
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 CGHQQMLSARLVKLIWIYGFKEC 298
CGH+++ S +V+L ++ G K C
Sbjct: 20 CGHREVCSTCVVRLRFVMGDKHC 42
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 132 PSNNIFDLETNPKVSPF 182
PSN + D++ NPK+S F
Sbjct: 503 PSNILLDMDLNPKISDF 519
>12_02_0360 -
17966857-17966865,17966866-17966954,17967276-17967399,
17967639-17967717,17968267-17968352,17968471-17968661,
17970496-17970560,17971192-17971282,17971705-17971801,
17971883-17972128,17972248-17972505
Length = 444
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 30 CAVFLIILFCAYNI 71
CA+ LI+LFCAYNI
Sbjct: 129 CAL-LIVLFCAYNI 141
>10_01_0209 +
2236530-2237301,2239196-2239297,2239535-2239716,
2240210-2240420,2240526-2240766,2240861-2241011,
2241116-2241424
Length = 655
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 132 PSNNIFDLETNPKVSPF 182
PSN + D E NPK+S F
Sbjct: 464 PSNILLDSEMNPKISDF 480
>10_01_0208 -
2228234-2228254,2228494-2228709,2228796-2228946,
2229031-2229268,2229394-2229604,2229765-2229943,
2230041-2230151,2230445-2231240
Length = 640
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 132 PSNNIFDLETNPKVSPF 182
PSN + D E NPK+S F
Sbjct: 474 PSNILLDSEMNPKISDF 490
>01_06_0119 + 26616087-26616278,26617190-26617669
Length = 223
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 239 GDHTKQKYLLKSYGQNHRSKWRHFWV 162
GD + + K G HR WRH+ V
Sbjct: 42 GDWGRGMKMRKIEGMKHRKSWRHYLV 67
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +3
Query: 132 PSNNIFDLETNPKVSPF*PVILTIRFE*VFL-------FCVVTNK 245
P+N + D NPKVS F L ++F+ V + C++TNK
Sbjct: 542 PANILLDDNLNPKVSDFGSSELILKFKHVCVDKNYVDPVCILTNK 586
>04_04_1665 -
35164114-35164188,35164361-35164415,35164535-35164844,
35165401-35165521,35165701-35165796,35166163-35166266,
35167368-35167485
Length = 292
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = -2
Query: 203 YGQNHRSKWRHF-WVSF 156
+G+NHR W H W SF
Sbjct: 174 FGENHRFTWSHISWESF 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,107,296
Number of Sequences: 37544
Number of extensions: 142226
Number of successful extensions: 278
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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