Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K19
         (300 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ100757-1|AAZ08764.1|  120|Homo sapiens immunoglobulin heavy ch...    30   1.2  
AF267780-1|AAF78686.1|   34|Homo sapiens immunoglobulin A heavy ...    28   4.7  
BC125226-1|AAI25227.1|  639|Homo sapiens FGD6 protein protein.         28   6.2  
BC125225-1|AAI25226.1|  639|Homo sapiens FGD6 protein protein.         28   6.2  
AK128492-1|BAC87464.1| 1053|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AK124904-1|BAC85990.1| 1430|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AK002045-1|BAA92052.1|  432|Homo sapiens protein ( Homo sapiens ...    28   6.2  

>DQ100757-1|AAZ08764.1|  120|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 120

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 199 PYDLSRYFCFVWSPTNVVCPVSETYMDLWFQG 294
           P D +RY+C  +S   ++   +  YMD+W QG
Sbjct: 87  PEDTARYYCAKFSTAYLIKGGAGDYMDVWGQG 118


>AF267780-1|AAF78686.1|   34|Homo sapiens immunoglobulin A heavy
           chain protein.
          Length = 34

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 205 DLSRYFCF--VWSPTNVVCPVSETYMDLWFQG 294
           D + Y+C   +  PT++V  VS  Y D W QG
Sbjct: 3   DTAMYYCARDLSGPTHIVMLVSHHYFDYWGQG 34


>BC125226-1|AAI25227.1|  639|Homo sapiens FGD6 protein protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = -2

Query: 281 KSI*VSLTGQTTFVGDHTKQKYLLKSYGQNHRSKWRHFWVSF*VKNIITGQLFSKSE*YL 102
           K I  +L   +    D +   YL +S G  ++  W+HFW  F +KN +    ++ SE   
Sbjct: 527 KKIPAALKEVSANTEDSSMSGYLYRSKG--NKKPWKHFW--FVIKNKVL-YTYAASEDVA 581

Query: 101 LRQNVGSL*YNIIRTEKNN*EHR 33
             ++   L + +I+ +  N E +
Sbjct: 582 ALESQPLLGFTVIQVKDENSESK 604


>BC125225-1|AAI25226.1|  639|Homo sapiens FGD6 protein protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = -2

Query: 281 KSI*VSLTGQTTFVGDHTKQKYLLKSYGQNHRSKWRHFWVSF*VKNIITGQLFSKSE*YL 102
           K I  +L   +    D +   YL +S G  ++  W+HFW  F +KN +    ++ SE   
Sbjct: 527 KKIPAALKEVSANTEDSSMSGYLYRSKG--NKKPWKHFW--FVIKNKVL-YTYAASEDVA 581

Query: 101 LRQNVGSL*YNIIRTEKNN*EHR 33
             ++   L + +I+ +  N E +
Sbjct: 582 ALESQPLLGFTVIQVKDENSESK 604


>AK128492-1|BAC87464.1| 1053|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46642 fis, clone TRACH3003037, weakly  similar to
            Rho/Rac guanine nucleotide exchange factor. ).
          Length = 1053

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = -2

Query: 281  KSI*VSLTGQTTFVGDHTKQKYLLKSYGQNHRSKWRHFWVSF*VKNIITGQLFSKSE*YL 102
            K I  +L   +    D +   YL +S G  ++  W+HFW  F +KN +    ++ SE   
Sbjct: 941  KKIPAALKEVSANTEDSSMSGYLYRSKG--NKKPWKHFW--FVIKNKVL-YTYAASEDVA 995

Query: 101  LRQNVGSL*YNIIRTEKNN*EHR 33
              ++   L + +I+ +  N E +
Sbjct: 996  ALESQPLLGFTVIQVKDENSESK 1018


>AK124904-1|BAC85990.1| 1430|Homo sapiens protein ( Homo sapiens cDNA
            FLJ42914 fis, clone BRHIP3025161, weakly  similar to
            Rho/Rac guanine nucleotide exchange factor. ).
          Length = 1430

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = -2

Query: 281  KSI*VSLTGQTTFVGDHTKQKYLLKSYGQNHRSKWRHFWVSF*VKNIITGQLFSKSE*YL 102
            K I  +L   +    D +   YL +S G  ++  W+HFW  F +KN +    ++ SE   
Sbjct: 1318 KKIPAALKEVSANTEDSSMSGYLYRSKG--NKKPWKHFW--FVIKNKVL-YTYAASEDVA 1372

Query: 101  LRQNVGSL*YNIIRTEKNN*EHR 33
              ++   L + +I+ +  N E +
Sbjct: 1373 ALESQPLLGFTVIQVKDENSESK 1395


>AK002045-1|BAA92052.1|  432|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11183 fis, clone PLACE1007488, weakly similar to
           PUTATIVE RHO/RAC GUANINE NUCLEOTIDE EXCHANGE FACTOR. ).
          Length = 432

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = -2

Query: 281 KSI*VSLTGQTTFVGDHTKQKYLLKSYGQNHRSKWRHFWVSF*VKNIITGQLFSKSE*YL 102
           K I  +L   +    D +   YL +S G  ++  W+HFW  F +KN +    ++ SE   
Sbjct: 320 KKIPAALKEVSANTEDSSMSGYLYRSKG--NKKPWKHFW--FVIKNKVL-YTYAASEDVA 374

Query: 101 LRQNVGSL*YNIIRTEKNN*EHR 33
             ++   L + +I+ +  N E +
Sbjct: 375 ALESQPLLGFTVIQVKDENSESK 397


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,062,916
Number of Sequences: 237096
Number of extensions: 897487
Number of successful extensions: 1518
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)