Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K18
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.61 
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   5.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    24   7.6  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    24   7.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    24   10.0 
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    24   10.0 

>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 224 NSITRLAALRCPVALGFDIDRQTCDWKSNVKN 319
           N    + ALRCP+ L    D QT  WK   K+
Sbjct: 27  NMTIPVRALRCPIWLWPTYDAQTIPWKKKKKS 58


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 80  SRVKRQEDDGSDDLTPDQLCEGRPADEYFRLSTEGDCRDV 199
           S++ + + D +DD + +   E  P  E+  +ST+G C  V
Sbjct: 149 SQLYKTQHDENDDASDNSDVEEDPILEHKSISTKGACNRV 188


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 224  NSITRLAALRCPVALGFDIDRQTCDWKSNV 313
            N +T  +A+  P+A+ F+I   T +W +++
Sbjct: 4211 NVVTDNSAVDYPIAIQFEIQGDTLNWLTSL 4240


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 185 DCRDVVRCDKGLENS 229
           DC    +CDKGLE+S
Sbjct: 43  DCFCCTKCDKGLEHS 57


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 21/72 (29%), Positives = 26/72 (36%)
 Frame = -2

Query: 255 HRNAASLVMLFSRPLSHLTTSLQSPSVLRRKYSSAGLPXXXXXXXXXXXXXXSCRLTRDS 76
           H +  S VM   +PLS L T     +V  + Y   G                S +   D 
Sbjct: 48  HPSGPSFVMQTGKPLSELLT---PETVGEKVYKKYGKQLPFLFKVLSINKVLSIQAHPDK 104

Query: 75  PLTKQLSNNIPK 40
           PL KQL    PK
Sbjct: 105 PLGKQLHKTNPK 116


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 305 SNVKNCDKLEKPRKI 349
           SN KN DKL+K RK+
Sbjct: 359 SNKKNLDKLKKMRKL 373


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 146 RPADEYFRLS--TEGDCRDVVRCDKGL 220
           R  +++FR+   T  DC+DV+ C K L
Sbjct: 107 RKRNKWFRVGHLTYPDCKDVIACCKQL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,932
Number of Sequences: 5004
Number of extensions: 26154
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)