Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K18
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 33 0.057
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 33 0.057
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 33 0.100
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 32 0.17
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 32 0.17
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 28 2.8
AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral signa... 27 5.0
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 26 8.7
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 26 8.7
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z50797-8|CAL36515.1| 291|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical ... 26 8.7
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.057
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 248 LRCPVALGFDIDRQTCDWKSNVKNC 322
L CP L +D D Q C WKS V+ C
Sbjct: 166 LSCPTPLFYDADSQKCIWKSLVEEC 190
Score = 30.7 bits (66), Expect = 0.40
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 104 DGSDDLTPDQLCEGRPADEYFRLSTEGDCR-DVVRCDKGLENSITRLAALRCPVALGFDI 280
+GS +L P CEG+ AD + G C + + C G I R+ + CP +L F+
Sbjct: 238 EGSGELEPT--CEGK-ADG---IHPNGVCSTNFLTCSGG----IARI--MDCPASLVFNP 285
Query: 281 DRQTCDWKSNVKNCDKLEKPR 343
CDW +V C L P+
Sbjct: 286 TILVCDWPRDVAECAGLPTPQ 306
Score = 29.9 bits (64), Expect = 0.70
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +2
Query: 122 TPDQLCEGRPADEYFRLSTEGDCRD-VVRCDKGLENSITRLAALRCPVALGFDIDRQTCD 298
TP CE D YF G C C G R + CP L F CD
Sbjct: 304 TPQPTCE---EDGYFSF---GQCSSSFTACTNG------RAIVMFCPAGLKFSESTVRCD 351
Query: 299 WKSNVKNCDK 328
++SNV C +
Sbjct: 352 YESNVSECQE 361
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.057
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 248 LRCPVALGFDIDRQTCDWKSNVKNC 322
L CP L +D D Q C WKS V+ C
Sbjct: 166 LSCPTPLFYDADSQKCIWKSLVEEC 190
Score = 30.7 bits (66), Expect = 0.40
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 104 DGSDDLTPDQLCEGRPADEYFRLSTEGDCR-DVVRCDKGLENSITRLAALRCPVALGFDI 280
+GS +L P CEG+ AD + G C + + C G I R+ + CP +L F+
Sbjct: 238 EGSGELEPT--CEGK-ADG---IHPNGVCSTNFLTCSGG----IARI--MDCPASLVFNP 285
Query: 281 DRQTCDWKSNVKNCDKLEKPR 343
CDW +V C L P+
Sbjct: 286 TILVCDWPRDVAECAGLPTPQ 306
Score = 29.9 bits (64), Expect = 0.70
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +2
Query: 122 TPDQLCEGRPADEYFRLSTEGDCRD-VVRCDKGLENSITRLAALRCPVALGFDIDRQTCD 298
TP CE D YF G C C G R + CP L F CD
Sbjct: 304 TPQPTCE---EDGYFSF---GQCSSSFTACTNG------RAIVMFCPAGLKFSESTVRCD 351
Query: 299 WKSNVKNCDK 328
++SNV C +
Sbjct: 352 YESNVSECQE 361
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 32.7 bits (71), Expect = 0.100
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 254 CPVALGFDIDRQTCDWKSNVKNC-DKLEKPR 343
CP L F+ +CDW NV +C +K EKP+
Sbjct: 207 CPANLVFNPAISSCDWPKNVMDCSEKSEKPQ 237
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 254 CPVALGFDIDRQTCDWKSNVKNCD 325
CP L F Q CD++ NV CD
Sbjct: 268 CPDGLMFSEKNQMCDYEWNVDECD 291
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.17
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 137 CEGRPADEYFRLSTEGDCRD-VVRCDKGLENSITRLAALRCPVALGFDIDRQTCDWKSNV 313
C G+ AD ++ G+C D C G L ++CP L FD R CD+ NV
Sbjct: 214 CVGK-ADGFYSF---GECSDHYTACSNGY------LIPMQCPARLAFDEARVICDYVMNV 263
Query: 314 KNC 322
C
Sbjct: 264 PEC 266
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.17
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 137 CEGRPADEYFRLSTEGDCRD-VVRCDKGLENSITRLAALRCPVALGFDIDRQTCDWKSNV 313
C G+ AD ++ G+C D C G L ++CP L FD R CD+ NV
Sbjct: 214 CVGK-ADGFYSF---GECSDHYTACSNGY------LIPMQCPARLAFDEARVICDYVMNV 263
Query: 314 KNC 322
C
Sbjct: 264 PEC 266
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 185 DCRDVVRCDKGLENSITRLAALRCPVALGFDIDRQTCDWKSNVKNCDKLEKPRKILP 355
DC D E +I R CP L + CD+K +V++C + + P
Sbjct: 799 DCEDYYISCNNFETTINR-----CPAGLFYSKLNNRCDYKEHVEDCPEYKPTPSTTP 850
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 194 DVVRCDKGL-ENSITRLAALRCPVALGFDIDRQTCDWKSNVKNC 322
D V+C + S +L CP L + +D+ CD+ +VK+C
Sbjct: 213 DNVKCSPYFWQCSNGKLFRKTCPEKLIYVLDQNLCDFPESVKDC 256
>AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral
signaling target protein 2 protein.
Length = 661
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 216 VLRTASPGSLHYGAQSLSASISTVKHVIGNPMLR 317
+L PG L +GA+ LSA + + H + ++R
Sbjct: 93 ILHDTLPGQLWFGAECLSAGSNIIDHETESDLIR 126
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 219 LRTASPGSLHYGAQSLSASISTVKHVIGNPMLR 317
+ A+PG LH+ QS S + + + N +L+
Sbjct: 1378 MELATPGQLHFVQQSTSTHLDKLTFALSNKILK 1410
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 219 LRTASPGSLHYGAQSLSASISTVKHVIGNPMLR 317
+ A+PG LH+ QS S + + + N +L+
Sbjct: 1378 MELATPGQLHFVQQSTSTHLDKLTFALSNKILK 1410
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 241 EPGDAVLKT--LVTPDDISTIAFGAETEIFVCWPALAQL 131
EPG+ L + +V P I T F A T+ FV P AQL
Sbjct: 1143 EPGETPLPSPNVVRPTIIPTAQFLAPTQQFVLQPTPAQL 1181
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 241 EPGDAVLKT--LVTPDDISTIAFGAETEIFVCWPALAQL 131
EPG+ L + +V P I T F A T+ FV P AQL
Sbjct: 1143 EPGETPLPSPNVVRPTIIPTAQFLAPTQQFVLQPTPAQL 1181
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 241 EPGDAVLKT--LVTPDDISTIAFGAETEIFVCWPALAQL 131
EPG+ L + +V P I T F A T+ FV P AQL
Sbjct: 378 EPGETPLPSPNVVRPTIIPTAQFLAPTQQFVLQPTPAQL 416
>Z50797-8|CAL36515.1| 291|Caenorhabditis elegans Hypothetical
protein T22H6.6c protein.
Length = 291
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 241 EPGDAVLKT--LVTPDDISTIAFGAETEIFVCWPALAQL 131
EPG+ L + +V P I T F A T+ FV P AQL
Sbjct: 29 EPGETPLPSPNVVRPTIIPTAQFLAPTQQFVLQPTPAQL 67
>AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical
protein F29A7.2 protein.
Length = 307
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 137 CEGRPADEYFRLSTEGDCRDVVRCDKGLENSI 232
C G P FR + EG+C +V R L+ ++
Sbjct: 113 CLGTPVFTVFRSANEGNCNNVCRALNDLKMNV 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,170,114
Number of Sequences: 27780
Number of extensions: 156532
Number of successful extensions: 545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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