Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K17
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   0.99 
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   1.3  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   2.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   3.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    23   5.3  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    23   7.0  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    23   9.2  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    23   9.2  

>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  YFKNKTIFK*LINILSLELCCLFSYV 110
           YF+N ++   L+ +L L   C+F YV
Sbjct: 627 YFQNNSLQHLLVPVLGLASICVFGYV 652


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 112  DTYENKQHNSRDNIFINHLNMVLFL 38
            + YE K  N+R N+FI  +  +L +
Sbjct: 959  ENYEKKHRNARKNVFIRKVAKLLMI 983


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +2

Query: 8   EIIYLKLSLL*KQNHI*MINKYIIPRVVLFIFICVKMYIFIYLF 139
           E++ +++++   Q +I +IN  +IP V+LF F C  +Y F++ F
Sbjct: 17  ELLSIRINIFGLQLNI-IIN--LIPLVLLFAFFCPCIY-FLHTF 56


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 156 QSGFNALGIYSHSILGGEEINICI 227
           Q   N L +Y H I+ G   ++CI
Sbjct: 809 QGSVNTLVLYKHLIVAGINASVCI 832


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 142 VK*INKNIHFDTYENKQHNSRDNIFINHLNMVLF 41
           +K ++    +  YE+    S DNIF N  + + F
Sbjct: 299 IKALDVEKRYVLYESLLEQSYDNIFFNSFDCIFF 332


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 63  LINILSLELCCLFSYVSKCIFLFIYLTLYY---EQSGFNALGIYSHSI 197
           L+NI+   LC    Y    I +F +LT  Y   E S  N+    ++S+
Sbjct: 457 LLNIVHKSLCEAVRYTEMNINIFCHLTNSYPVEEVSSLNSQSARNYSL 504


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  KYIIPRVVLFIFICVKMYIFIYLFNTL 148
           KY + R++    +CV +Y   YL+ T+
Sbjct: 8   KYFLRRILALFVLCVPIY---YLYTTV 31


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 127 KNIHFDTYENKQHNSRDNIFINHLNMVLF 41
           KN   D +EN+++    +I++     VLF
Sbjct: 458 KNFDADDFENERYGHAVDIYLKQERKVLF 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,757
Number of Sequences: 5004
Number of extensions: 18156
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)