Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K17
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    26   4.8  
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    25   8.3  

>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 69  NILSLELCCLFSYVSKCIFLFIYLTLYYEQSGFNALGIYSHSIL 200
           N L L   C FSY++ C      ++    Q  F+A   ++H+I+
Sbjct: 100 NNLKLRNSCSFSYLTYCANCAFLVSTVSLQLKFSAFARFTHNIV 143


>03_01_0006 +
           65675-65808,66385-66457,68290-68526,68648-68785,
           68871-69005,69131-69310,69495-69701,69821-69943,
           70240-70359,70758-70880,72067-72171,72254-72398,
           73443-73607,73669-73907,74452-74484,74977-75058,
           75200-75360,75739-75951,76789-76971,77051-77220,
           77375-77474
          Length = 1021

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  MINKYIIPRVVLFIFICVKMYIFIYLFN 142
           +I  Y+    VLF +   K   F++LFN
Sbjct: 777 IIGAYLAVTTVLFFWAAYKTQFFVHLFN 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,429,461
Number of Sequences: 37544
Number of extensions: 83663
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)