Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K17
         (264 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    30   1.2  
AF103906-1|AAD41724.1|  764|Homo sapiens vanilloid receptor-like...    29   3.5  
AB041941-1|BAD83595.1|  915|Homo sapiens G-protein coupled recep...    27   8.2  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 92  LFIFICVKMYIFIYLF 139
           +FI+IC+ +YIFIY+F
Sbjct: 83  IFIYICICLYIFIYVF 98



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 71  YIIPRVVLFIFICVKMYIFIYLF 139
           YI   + ++I+IC+ +Y++IYL+
Sbjct: 44  YIYLYIFIYIYICLYIYLYIYLY 66


>AF103906-1|AAD41724.1|  764|Homo sapiens vanilloid receptor-like
           protein protein.
          Length = 764

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 33  YFKNKTIFK*LINILSLELCCLFS--YVSKCIFLFI--YLTLYYEQSGFNALGIYS 188
           YF+   +F  L+ ++SL LC L    Y+   +   +  +L L Y   GF   GIYS
Sbjct: 469 YFEILFLFHSLLTVVSLVLCFLVIEWYLPLLVSALVLGWLNLLYYTRGFQHTGIYS 524


>AB041941-1|BAD83595.1|  915|Homo sapiens G-protein coupled receptor
           protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 86  VVLFIFICVKMYIFIYLF 139
           V+ F+FI + +Y+FIYLF
Sbjct: 11  VIFFLFIYLFIYLFIYLF 28


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,451,130
Number of Sequences: 237096
Number of extensions: 581855
Number of successful extensions: 4526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4519
length of database: 76,859,062
effective HSP length: 65
effective length of database: 61,447,822
effective search space used: 1351852084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)