Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K17
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopepti...    25   5.6  
AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide ...    25   5.6  
U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  FSYVSKCIFLFIYLTLY 149
           FSY  +CIFL ++L L+
Sbjct: 628 FSYTIRCIFLIVFLVLF 644


>Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical
           protein F59A1.15 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 132 IYLTLYYEQSGF--NALGIYSHSILGGEEINICI*ISRH*MLTLT 260
           I   LY+ Q  F  N  G+YS   +GGE I + I I    +L +T
Sbjct: 479 IIAVLYFVQYSFDGNVRGLYSMDSIGGEMILVLISILAMLILLIT 523


>Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.6 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 248 HLMPAYLDTYINFFTT 201
           HL+ AY+D Y++F TT
Sbjct: 55  HLVGAYVDVYLSFVTT 70


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 117 CIFLFIYLTLYYEQSGFN 170
           C+FLFI+L  Y + S F+
Sbjct: 9   CLFLFIFLLSYQQASSFS 26


>AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopeptide
           symporter OPT-3 protein.
          Length = 701

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 72  ILSLELCCLFSYVSKCIFLFIYLTLYYEQSGFNALGIY 185
           +L  E C  FS+      LFIYL   +E S   A  IY
Sbjct: 20  MLGNEFCERFSFYGMKTILFIYLITEHEFSPSKATFIY 57


>AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide
           transporter protein 3 protein.
          Length = 701

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 72  ILSLELCCLFSYVSKCIFLFIYLTLYYEQSGFNALGIY 185
           +L  E C  FS+      LFIYL   +E S   A  IY
Sbjct: 20  MLGNEFCERFSFYGMKTILFIYLITEHEFSPSKATFIY 57


>U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical
           protein K10C2.6 protein.
          Length = 113

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 36  FKNKTIFK*LINILSLELCCLFSYVSKCIF 125
           F N   F  ++ + S++LC +FS +   IF
Sbjct: 36  FTNSVSFSEILTVASIKLCSIFSKIILNIF 65


>Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical
           protein T13H5.5 protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 121 IHFDTYENKQHNSRDNIFINH 59
           +HF T++N ++N  D  +I H
Sbjct: 210 VHFPTFKNDKNNDWDEWWIRH 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,314,895
Number of Sequences: 27780
Number of extensions: 96545
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)